JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SKIDA1_chr10_21508475_21530682	0/0	a0003	910	20	19	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	a0004	910	7	0	0	7	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	a0005	909	2	2	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	a0006	908	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	a0007	910	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	a0008	910	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	a0009	908	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	a0010	910	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIL_chr3_170352715_170401835	0/1	a0001	684	233	34	52	115	7	24	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	1/0	a0002	684	118	57	17	33	1	9	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0003	684	2	0	0	0	0	2	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0004	684	2	0	2	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0005	684	2	0	0	2	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0006	684	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0007	393	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0008	684	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0009	684	1	0	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	a0010	684	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKI_chr1_2223319_2315213	1/1	a0001	728	316	83	51	126	13	41	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	a0002	728	13	5	5	0	1	2	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	a0003	722	1	0	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKOR1_chr15_67820509_67839582	1/1	a0001	965	403	85	72	188	13	43	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0002	952	11	0	6	4	1	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0003	965	4	4	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0004	965	3	3	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0005	965	2	2	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0006	965	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0007	908	1	0	1	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0008	965	1	0	0	0	0	1	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0009	965	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	a0010	952	1	0	1	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR2_chr18_47201169_47256660	1/0	a0001	1015	188	54	26	81	7	19	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/1	a0002	1015	130	25	26	65	7	6	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0003	1015	5	0	0	0	0	5	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0004	1016	4	4	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0005	1016	3	0	0	3	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0006	1016	2	2	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0007	1015	2	2	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0008	1015	2	0	0	2	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0009	1015	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0010	1015	1	0	1	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0011	1015	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0012	1015	1	0	0	1	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0013	1015	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0014	1015	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0015	1015	1	0	1	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	a0016	1015	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKP1_chr5_134143935_134181950	1/1	a0001	163	360	86	58	160	12	42	copy fasta	SKP1	chr5	134143935	134181950
SKP2_chr5_36147111_36189319	1/1	a0001	424	402	92	70	188	8	42	copy fasta	SKP2	chr5	36147111	36189319
SLA2_chr20_36607318_36651196	1/1	a0001	261	346	87	74	128	14	41	copy fasta	SLA2	chr20	36607318	36651196