JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLA2_chr20_36607318_36651196	0/0	a0002	261	9	9	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	a0003	261	2	2	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	a0004	261	1	0	0	1	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	a0005	261	1	0	0	0	0	1	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	a0006	261	1	0	0	1	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLAIN1_chr13_77692687_77769229	0/1	a0001	591	290	73	58	108	14	36	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	a0002	592	8	7	0	1	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	a0003	591	1	0	0	1	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	1/0	a0004	590	1	0	0	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN2_chr4_48336529_48431201	1/1	a0001	581	342	83	60	139	18	40	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	a0002	581	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	a0003	581	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	a0004	581	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	a0005	350	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	a0006	581	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	a0007	575	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAMF1_chr1_160603106_160652044	1/0	a0001	335	361	90	54	173	9	34	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	a0002	335	34	1	20	9	1	3	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/1	a0003	335	17	0	5	4	2	5	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	a0004	335	3	3	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	a0005	335	2	2	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	a0006	335	2	2	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	a0007	335	1	0	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF6_chr1_160480036_160528255	1/1	a0001	332	392	91	74	170	14	41	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	a0002	332	2	1	0	0	0	1	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF7_chr1_160734247_160759821	1/1	a0001	335	392	77	76	191	14	32	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	a0002	335	21	0	2	13	0	6	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	a0003	335	15	15	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	a0004	335	5	0	0	0	0	5	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	a0005	335	4	0	0	4	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	a0006	335	1	0	0	0	0	1	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	a0007	335	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	a0008	335	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF8_chr1_159821873_159842492	1/1	a0001	285	416	90	79	194	15	36	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0002	285	36	0	3	20	0	13	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0003	285	7	7	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0004	64	5	0	0	5	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0005	285	4	0	3	0	1	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0006	285	3	0	0	3	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0007	285	1	1	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0008	285	1	0	1	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0009	285	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0010	285	1	0	0	0	0	1	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	a0011	285	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF9_chr1_159946492_159959237	0/0	a0001	289	324	54	70	147	14	39	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0002	289	34	24	4	0	1	5	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0003	289	8	8	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0004	289	6	0	6	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0005	289	3	3	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0006	289	3	3	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237