JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLAMF9_chr1_159946492_159959237	0/0	a0007	289	2	2	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0008	289	1	0	1	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0009	289	1	0	0	1	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0010	289	1	0	1	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	a0011	289	1	0	0	0	1	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLA_chr8_133031728_133107602	1/1	a0001	276	326	80	67	124	12	41	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	a0002	276	17	16	1	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	a0003	276	1	0	0	0	0	1	copy fasta	SLA	chr8	133031728	133107602
SLBP_chr4_1687731_1717319	1/1	a0001	270	375	90	77	144	16	46	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	a0002	270	1	0	1	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLC10A1_chr14_69770416_69802241	1/1	a0001	349	327	89	71	123	8	34	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	a0002	349	6	5	1	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	a0003	349	4	0	0	4	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	a0004	349	2	2	0	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	a0005	349	1	0	0	1	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A2_chr13_103038998_103071417	0/0	a0001	348	328	84	57	145	10	32	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	1/0	a0002	348	83	5	13	53	4	7	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/1	a0003	348	9	2	5	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	a0004	348	4	0	3	0	0	1	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	a0005	348	1	0	0	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	a0006	348	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	a0007	348	1	0	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	a0008	348	1	0	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A3_chrX_154482311_154495629	1/1	a0001	477	308	76	61	122	13	34	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	a0002	477	3	2	1	0	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	a0003	153	1	0	0	1	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A4_chr4_48478343_48494526	1/1	a0001	437	383	95	68	162	16	40	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	a0002	437	3	0	0	3	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	a0003	437	2	0	0	0	0	2	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	a0004	437	2	0	0	2	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	a0005	437	1	0	0	1	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	a0006	437	1	1	0	0	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A5_chr8_81688631_81700058	1/1	a0001	438	362	72	64	178	14	32	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0002	438	36	6	3	22	0	5	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0003	438	16	15	1	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0004	438	4	0	0	4	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0005	438	4	4	0	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0006	428	1	0	0	1	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0007	200	1	1	0	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0008	438	1	0	0	1	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	a0009	438	1	0	0	0	0	1	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A6_chr4_86818468_86854384	1/0	a0001	377	306	78	48	146	14	19	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/1	a0002	377	24	7	10	1	1	4	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0003	377	4	0	3	0	1	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0004	377	4	4	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0005	377	3	3	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0006	377	2	2	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0007	377	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0008	377	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0009	377	1	0	1	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384