JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC12A3_chr16_56860207_56920850	0/0	a0002	1021	24	0	8	13	0	3	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0003	1021	22	10	4	2	2	4	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0004	1021	6	6	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0005	1021	4	0	0	4	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0006	1021	4	0	4	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0007	1021	3	0	0	3	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	1/0	a0008	1021	2	0	0	0	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0009	1021	2	2	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0010	1021	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0011	1021	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0012	1021	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0013	1021	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0014	1021	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0015	1021	1	0	1	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0016	1021	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0017	1021	1	0	0	0	1	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0018	1021	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0019	1021	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	a0020	1021	1	0	0	0	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A4_chr16_67938474_67973637	1/1	a0001	1085	265	84	53	80	10	36	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	a0002	1085	11	8	1	0	0	2	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	a0003	1085	2	1	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	a0004	1085	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	a0005	1085	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A5_chr20_46024215_46065150	1/1	a0001	1116	396	83	63	183	18	47	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	a0002	1116	5	2	3	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	a0003	1116	1	0	0	1	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	a0004	1116	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	a0005	1116	1	0	0	0	0	1	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A6_chr15_34224784_34342781	1/1	a0001	1150	270	89	46	101	4	28	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	a0002	1150	2	0	0	2	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	a0003	1150	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	a0004	1150	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A7_chr5_1045384_1117063	0/0	a0001	1083	73	34	8	18	2	11	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	a0002	1083	39	10	7	13	2	7	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	a0003	1083	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	a0004	1083	1	0	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	a0005	1083	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	a0006	1083	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	a0007	1083	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	a0008	1083	1	0	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A8_chr3_125077644_125217748	0/0	a0001	714	199	51	39	85	5	19	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/1	a0002	714	88	3	24	44	2	14	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0003	714	25	17	4	3	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0004	714	14	8	1	3	1	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0005	714	9	0	2	6	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0006	714	8	1	5	1	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0007	714	3	3	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0008	714	3	3	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0009	714	3	0	2	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748