JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC12A8_chr3_125077644_125217748	0/0	a0010	714	2	2	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0011	216	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	1/0	a0012	714	1	0	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0013	714	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0014	714	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0015	714	1	0	1	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0016	714	1	0	0	0	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0017	714	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	a0018	714	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A9_chr7_100847713_100872010	1/1	a0001	914	416	85	68	200	18	43	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	a0002	914	2	2	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	a0003	914	2	2	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	a0004	914	1	0	0	0	0	1	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	a0005	914	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	a0006	914	1	0	1	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	a0007	914	1	0	1	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC13A1_chr7_123108531_123204969	1/1	a0001	595	257	68	53	107	5	22	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	a0002	595	83	13	14	45	3	8	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	a0003	11	3	0	1	0	2	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	a0004	595	2	2	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	a0005	595	2	2	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	a0006	595	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	a0007	595	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	a0008	595	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A2_chr17_28468644_28502781	0/0	a0001	592	197	61	43	66	5	22	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	1/1	a0002	592	179	30	36	80	11	20	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	a0003	592	6	0	0	6	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	a0004	592	1	0	1	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	a0005	592	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	a0006	592	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	a0007	592	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	a0008	592	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	a0009	592	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A3_chr20_46552828_46656459	1/1	a0001	602	365	78	62	163	14	46	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0002	602	10	9	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0003	602	4	0	0	4	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0004	602	3	0	1	0	2	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0005	602	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0006	602	1	0	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0007	602	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0008	602	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0009	602	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0010	602	1	0	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0011	602	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	a0012	602	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A4_chr7_135676231_135733186	1/1	a0001	627	363	85	63	158	15	40	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	a0002	627	3	1	1	0	1	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	a0003	627	2	2	0	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	a0004	627	1	0	0	0	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	a0005	627	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186