JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC13A4_chr7_135676231_135733186	0/0	a0006	627	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	a0007	627	1	0	0	0	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A5_chr17_6679719_6718369	1/1	a0001	568	454	98	80	214	12	48	copy fasta	SLC13A5	chr17	6679719	6718369
SLC14A1_chr18_45719181_45757520	0/1	a0001	389	148	20	41	66	7	13	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	1/0	a0002	389	120	45	22	21	9	22	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0003	389	112	24	11	70	0	7	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0004	389	28	0	0	27	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0005	389	3	3	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0006	389	2	0	0	2	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0007	381	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0008	389	1	0	0	0	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0009	389	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0010	389	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	a0011	389	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A2_chr18_45610476_45688688	0/0	a0001	920	94	25	13	44	3	9	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/1	a0002	920	82	18	16	39	2	6	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0003	920	58	18	15	17	5	3	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0004	920	55	1	9	36	1	8	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0005	920	27	6	4	14	0	3	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0006	920	20	3	8	2	3	4	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0007	920	13	0	2	10	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	1/0	a0008	920	9	5	0	3	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0009	920	7	0	3	4	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0010	920	6	1	0	5	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0011	920	5	4	0	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0012	920	5	2	0	2	1	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0013	920	4	0	0	3	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0014	920	3	1	1	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0015	920	3	3	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0016	920	2	0	0	0	0	2	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0017	920	1	0	1	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0018	920	1	0	0	0	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0019	920	1	0	0	0	1	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0020	920	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0021	920	1	0	0	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0022	920	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0023	920	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0024	920	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	a0025	920	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC15A1_chr13_98678801_98757672	1/1	a0001	708	220	47	53	84	10	24	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0002	708	115	28	11	65	4	7	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0003	708	16	0	0	16	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0004	708	13	7	1	3	0	2	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0005	708	10	4	2	4	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0006	708	7	1	0	5	0	1	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0007	708	5	0	2	0	0	3	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0008	708	4	4	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0009	708	3	0	0	0	0	3	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0010	708	2	1	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0011	708	2	0	0	0	0	2	copy fasta	SLC15A1	chr13	98678801	98757672