JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC15A1_chr13_98678801_98757672	0/0	a0012	708	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0013	708	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0014	708	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0015	708	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0016	708	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0017	708	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0018	708	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0019	708	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0020	708	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0021	708	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	a0022	708	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A2_chr3_121889401_121949188	1/0	a0001	729	179	33	51	54	13	27	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/1	a0002	729	151	47	29	62	3	9	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	a0003	729	2	2	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	a0004	729	2	2	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	a0005	276	1	1	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	a0006	729	1	0	0	1	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	a0007	729	1	0	0	1	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	a0008	729	1	1	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A3_chr11_60932084_60957176	1/1	a0001	581	334	74	62	147	15	34	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0002	581	17	14	1	0	0	2	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0003	581	12	1	7	0	1	3	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0004	581	3	3	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0005	581	3	0	0	3	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0006	581	2	0	0	0	0	2	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0007	581	2	0	0	2	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0008	581	2	0	0	2	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0009	581	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0010	581	1	0	0	1	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0011	581	1	0	0	0	0	1	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0012	581	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0013	581	1	0	0	1	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0014	581	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	a0015	581	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A4_chr12_128788194_128828958	1/0	a0001	577	390	88	70	178	16	37	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/1	a0002	577	12	0	3	0	0	8	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0003	577	3	0	1	0	2	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0004	577	2	0	2	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0005	577	2	0	0	2	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0006	577	1	0	1	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0007	577	1	1	0	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0008	577	1	0	0	0	0	1	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0009	577	1	0	0	1	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0010	577	1	1	0	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0011	577	1	0	1	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0012	577	1	0	0	0	0	1	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0013	573	1	0	0	1	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	a0014	577	1	0	0	0	0	1	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A5_chr12_16183485_16282685	0/0	a0001	579	108	12	22	60	2	12	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/1	a0002	579	91	20	18	38	5	9	copy fasta	SLC15A5	chr12	16183485	16282685