JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC15A5_chr12_16183485_16282685	0/0	a0003	579	49	20	14	8	1	6	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0004	579	32	14	7	6	2	3	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0005	579	11	9	2	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0006	579	4	2	0	0	0	2	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0007	579	3	0	0	3	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0008	579	3	2	1	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0009	579	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0010	579	2	2	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0011	579	2	2	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0012	579	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0013	579	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0014	579	2	2	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0015	579	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0016	579	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0017	579	1	0	0	1	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	1/0	a0018	579	1	0	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0019	579	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0020	579	1	0	0	1	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0021	579	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0022	579	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0023	579	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	a0024	579	1	0	0	1	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC16A10_chr6_111082503_111236194	1/1	a0001	515	238	76	55	70	3	32	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	a0002	515	10	2	3	4	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	a0003	515	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	a0004	515	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A11_chr17_7036621_7049092	1/1	a0001	447	328	48	59	160	13	46	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0002	447	39	38	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0003	447	32	1	14	17	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0004	447	8	7	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0005	447	4	0	3	0	1	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0006	447	2	2	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0007	447	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0008	447	1	0	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0009	447	1	0	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0010	447	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0011	447	1	1	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0012	447	1	1	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	a0013	447	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A12_chr10_89425299_89540594	1/1	a0001	516	258	83	55	89	7	22	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	a0002	516	33	1	0	29	1	2	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	a0003	516	1	0	1	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A13_chr17_7031015_7045117	1/1	a0001	426	409	94	84	170	16	43	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0002	426	5	0	0	5	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0003	426	2	2	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0004	426	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0005	426	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0006	117	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0007	426	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0008	426	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117