JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC17A4_chr6_25749742_25786199	1/1	a0001	497	259	75	41	111	7	23	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0002	497	90	8	21	35	9	17	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0003	497	4	4	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0004	497	3	0	0	3	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0005	497	2	2	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0006	497	2	2	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0007	497	1	0	0	1	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0008	497	1	0	1	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0009	497	1	1	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0010	497	1	0	1	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0011	497	1	0	0	0	0	1	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	a0012	497	1	0	0	0	0	1	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A5_chr6_73588379_73658992	1/1	a0001	495	295	82	60	117	12	22	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	a0002	495	25	0	7	18	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	a0003	495	1	0	1	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	a0004	495	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	a0005	495	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	a0006	495	1	0	0	1	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A6_chr11_22333381_22384503	1/1	a0001	582	443	95	75	208	16	47	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	a0002	582	4	4	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	a0003	582	1	0	0	0	0	1	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	a0004	582	1	0	1	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	a0005	582	1	1	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A7_chr19_49424401_49446527	1/1	a0001	560	407	89	80	170	16	50	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	a0002	560	3	3	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	a0003	560	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	a0004	282	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	a0005	560	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	a0006	560	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A8_chr12_100352074_100427055	1/1	a0001	589	308	77	56	130	8	35	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	a0002	589	3	3	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	a0003	589	1	0	0	0	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	a0004	589	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	a0005	589	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A9_chr20_62947709_62974585	0/1	a0001	436	384	62	74	191	16	40	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	a0002	436	20	17	3	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	1/0	a0003	436	14	13	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	a0004	436	5	5	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	a0005	168	5	0	5	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	a0006	436	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	a0007	436	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	a0008	436	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	a0009	436	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC18A1_chr8_20139855_20188136	0/0	a0001	525	115	36	8	63	1	7	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	1/0	a0002	525	107	11	23	54	3	15	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0003	525	88	10	22	38	6	12	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0004	525	44	21	10	9	1	3	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0005	525	36	0	6	28	0	2	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0006	525	13	1	1	5	4	2	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0007	525	8	8	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136