JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC18A1_chr8_20139855_20188136	0/0	a0008	525	4	0	0	4	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0009	525	3	3	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/1	a0010	525	3	0	1	0	1	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0011	525	2	2	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0012	525	2	2	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0013	525	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0014	525	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0015	525	1	0	1	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0016	525	1	0	0	0	0	1	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0017	525	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0018	525	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0019	525	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0020	525	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	a0021	525	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A2_chr10_117236114_117284430	1/1	a0001	514	351	94	57	154	10	34	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	a0002	514	2	2	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	a0003	514	1	0	0	1	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	a0004	514	1	0	0	1	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	a0005	514	1	0	1	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A3_chr10_49605310_49617720	0/1	a0001	532	431	84	79	206	18	43	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	a0002	532	5	0	0	5	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	1/0	a0003	532	2	1	0	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	a0004	532	1	0	1	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	a0005	532	1	1	0	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	a0006	532	1	0	0	0	0	1	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	a0007	532	1	0	0	1	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18B1_chr6_132764370_132803637	1/1	a0001	456	224	32	51	101	10	28	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0002	456	51	44	1	3	1	2	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0003	456	12	9	0	0	1	2	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0004	456	11	0	4	4	0	3	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0005	456	2	0	0	2	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0006	456	1	0	1	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0007	456	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0008	456	1	0	0	0	0	1	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	a0009	456	1	0	1	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC19A1_chr21_45507565_45547440	1/0	a0001	591	164	55	24	67	4	13	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/1	a0002	591	142	21	31	60	9	20	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	a0003	591	7	5	0	0	1	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	a0004	591	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	a0005	591	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	a0006	591	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	a0007	591	1	0	1	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	a0008	591	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A2_chr1_169458909_169490944	1/1	a0001	497	371	83	75	150	14	47	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	a0002	497	12	0	0	12	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	a0003	497	1	1	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	a0004	497	1	0	1	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	a0005	497	1	0	0	0	0	1	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A3_chr2_227678763_227723028	1/1	a0001	496	339	49	75	153	16	44	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	a0002	496	38	33	5	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028