JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC19A3_chr2_227678763_227723028	0/0	a0003	496	11	11	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	a0004	496	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	a0005	496	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	a0006	496	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	a0007	496	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC1A1_chr9_4485468_4592469	1/1	a0001	524	374	88	74	158	16	36	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	a0002	524	7	5	2	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	a0003	524	2	2	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	a0004	524	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A2_chr11_35246205_35424558	1/1	a0001	574	305	84	50	140	6	23	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	a0002	574	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A3_chr5_36601606_36693334	1/1	a0001	542	367	85	65	162	14	39	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0002	542	5	2	1	1	0	1	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0003	542	2	0	0	2	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0004	542	1	1	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0005	542	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0006	542	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0007	542	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0008	542	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	a0009	542	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A4_chr2_64984399_65028865	1/0	a0001	532	317	78	47	146	12	33	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/1	a0002	532	64	12	12	25	1	13	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0003	532	3	0	2	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0004	532	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0005	532	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0006	532	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0007	532	1	0	0	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0008	532	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0009	532	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0010	532	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0011	532	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0012	532	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	a0013	532	1	0	0	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A5_chr19_46769883_46793594	1/0	a0001	541	300	82	56	113	7	41	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	a0002	541	92	1	12	75	0	4	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/1	a0003	541	30	9	8	0	7	5	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	a0004	541	2	2	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	a0005	541	2	2	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	a0006	541	1	0	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	a0007	541	1	0	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A6_chr19_14945033_14984864	1/1	a0001	564	405	93	73	177	16	44	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	a0002	564	1	0	1	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	a0003	564	1	1	0	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	a0004	564	1	0	0	1	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A7_chr1_53082183_53147638	1/1	a0001	560	264	82	34	116	4	26	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	a0002	560	127	9	32	59	10	17	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	a0003	560	3	0	3	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	a0004	560	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	a0005	560	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	a0006	560	1	0	1	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638