JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC1A7_chr1_53082183_53147638	0/0	a0007	560	1	0	0	0	0	1	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	a0008	560	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	a0009	560	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC20A1_chr2_112640939_112668825	1/1	a0001	679	325	83	60	134	16	30	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	a0002	679	5	5	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	a0003	679	1	1	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	a0004	679	1	0	0	0	0	1	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	a0005	679	1	1	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	a0006	679	1	0	0	0	0	1	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A2_chr8_42411475_42506231	1/1	a0001	652	219	78	29	80	5	25	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	a0002	652	16	14	2	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	a0003	652	2	0	1	0	1	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	a0004	652	1	0	0	0	0	1	copy fasta	SLC20A2	chr8	42411475	42506231
SLC22A10_chr11_63284903_63316783	1/0	a0001	541	217	57	24	107	8	20	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/1	a0002	95	162	25	37	68	10	21	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0003	541	6	0	0	6	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0004	541	5	5	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0005	541	3	1	2	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0006	541	3	3	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0007	541	2	0	0	2	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0008	541	1	0	1	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0009	541	1	0	0	0	0	1	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0010	541	1	1	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	a0011	95	1	0	0	1	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A11_chr11_64550941_64577875	1/0	a0001	550	376	88	69	171	14	33	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	a0002	550	2	2	0	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	a0003	550	1	0	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	a0004	550	1	0	0	0	0	1	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	a0005	550	1	0	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	a0006	550	1	0	0	1	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	a0007	550	1	0	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A12_chr11_64586220_64607344	1/1	a0001	553	380	92	62	168	18	38	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	a0002	257	5	0	0	5	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	a0003	553	2	2	0	0	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	a0004	553	1	0	0	1	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	a0005	553	1	0	0	1	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	a0006	553	1	0	0	1	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A13_chr3_38260812_38283757	1/1	a0001	551	329	81	74	127	14	31	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0002	551	6	0	0	6	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0003	551	4	4	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0004	551	3	3	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0005	551	2	0	0	0	0	2	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0006	551	1	1	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0007	551	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0008	551	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0009	551	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0010	551	1	0	0	0	0	1	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	a0011	551	1	1	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A14_chr3_38277294_38323575	0/0	a0001	594	187	31	37	82	10	27	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0002	594	68	13	19	31	1	4	copy fasta	SLC22A14	chr3	38277294	38323575