JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC22A14_chr3_38277294_38323575	0/0	a0003	594	27	1	4	22	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0004	594	18	5	2	9	0	2	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0005	594	16	0	2	14	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	1/0	a0006	594	12	5	3	2	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/1	a0007	594	11	7	2	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0008	594	6	0	1	5	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0009	594	6	3	0	2	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0010	594	5	5	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0011	594	5	0	5	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0012	261	5	0	1	0	3	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0013	594	4	4	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0014	594	4	0	0	4	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0015	594	4	4	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0016	594	3	0	1	2	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0017	594	2	2	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0018	594	2	2	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0019	594	2	0	0	1	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0020	594	2	0	2	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0021	594	2	0	1	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0022	594	2	1	1	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0023	63	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0024	594	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0025	594	1	0	1	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0026	594	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0027	594	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0028	594	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0029	594	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0030	594	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0031	594	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0032	594	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0033	594	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0034	594	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	a0035	594	1	0	0	0	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A15_chr1_115971513_116075054	1/1	a0001	547	302	78	61	126	9	26	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	a0002	547	2	0	1	0	1	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	a0003	547	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	a0004	547	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	a0005	547	1	0	0	1	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	a0006	547	1	0	0	1	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A16_chr6_110419687_110481613	1/1	a0001	577	210	48	38	98	8	16	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0002	577	111	26	9	62	3	11	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0003	577	43	9	13	18	2	1	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0004	577	18	1	8	0	3	6	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0005	577	6	1	3	0	0	2	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0006	577	5	5	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0007	577	4	0	4	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0008	577	4	0	0	4	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0009	577	3	3	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0010	577	2	0	0	0	0	2	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0011	577	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613