JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC22A16_chr6_110419687_110481613	0/0	a0012	577	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0013	577	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0014	577	1	0	1	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0015	577	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0016	577	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0017	577	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0018	577	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0019	577	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	a0020	577	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A17_chr14_23341318_23357887	1/1	a0001	11	440	100	74	200	16	48	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A18_chr11_2897278_2930246	0/0	a0001	424	170	17	32	87	7	27	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0002	424	146	49	30	48	5	14	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0003	424	34	30	3	0	1	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0004	424	19	0	5	12	1	1	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/1	a0005	424	11	0	4	0	3	3	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0006	424	7	0	1	3	1	2	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0007	424	5	0	0	5	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0008	424	3	0	3	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0009	424	2	2	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0010	424	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0011	424	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0012	424	1	0	1	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0013	424	1	0	0	0	0	1	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0014	424	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0015	424	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0016	424	1	0	1	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	a0017	424	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A1_chr6_160116815_160163718	0/1	a0001	453	226	59	29	119	3	15	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0002	554	56	16	9	13	8	10	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	1/0	a0003	554	44	1	10	24	1	7	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0004	453	36	4	0	30	0	2	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0005	452	35	6	18	0	2	9	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0006	554	5	0	2	0	2	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0007	453	3	0	3	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0008	453	2	2	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0009	453	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0010	453	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0011	453	1	0	0	0	0	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0012	453	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0013	554	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0014	554	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0015	453	1	0	1	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0016	453	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	a0017	453	1	0	0	0	0	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A23_chr6_3263973_3462050	1/1	a0001	686	221	81	50	66	0	22	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	a0002	686	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A24_chr11_63074940_63149221	0/1	a0001	500	93	2	22	47	6	15	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0002	500	82	20	4	43	5	10	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	1/0	a0003	552	65	19	11	28	2	4	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0004	500	34	3	14	6	4	7	copy fasta	SLC22A24	chr11	63074940	63149221