JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC22A24_chr11_63074940_63149221	0/0	a0005	552	22	7	1	13	0	1	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0006	408	20	0	1	19	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0007	500	18	17	1	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0008	500	7	7	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0009	552	6	0	3	0	1	2	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0010	500	6	0	0	6	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0011	346	4	4	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0012	500	2	1	1	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0013	552	2	2	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0014	500	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0015	300	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0016	552	1	0	0	0	0	1	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0017	552	1	1	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	a0018	552	1	1	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A25_chr11_63153437_63248599	0/0	a0001	547	151	13	30	86	7	15	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	1/1	a0002	547	141	27	31	55	8	18	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0003	547	33	27	2	0	1	3	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0004	547	5	5	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0005	547	4	4	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0006	547	3	3	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0007	547	2	0	0	2	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0008	547	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0009	547	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0010	255	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0011	255	1	0	1	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	a0012	547	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A2_chr6_160211755_160263821	0/1	a0001	555	250	60	43	100	12	34	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	1/0	a0002	555	49	15	5	25	0	3	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	a0003	555	7	7	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	a0004	555	1	0	0	0	0	1	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	a0005	555	1	0	0	1	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	a0006	201	1	1	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	a0007	555	1	1	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A31_chr16_89190761_89205537	1/0	a0001	446	171	54	52	36	8	20	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/1	a0002	380	154	22	19	90	6	16	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0003	446	43	0	6	35	0	2	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0004	445	30	0	2	24	0	4	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0005	380	12	4	4	0	1	3	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0006	380	3	3	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0007	446	2	2	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0008	446	1	0	0	0	1	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0009	446	1	0	1	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0010	380	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0011	380	1	0	0	0	0	1	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0012	446	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0013	380	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0014	446	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0015	446	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0016	446	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0017	445	1	0	0	0	0	1	copy fasta	SLC22A31	chr16	89190761	89205537