JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC22A31_chr16_89190761_89205537	0/0	a0018	380	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0019	446	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	a0020	446	1	0	0	0	0	1	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A3_chr6_160343378_160457577	1/1	a0001	556	316	81	59	126	14	34	copy fasta	SLC22A3	chr6	160343378	160457577
SLC22A3_chr6_160343378_160457577	0/0	a0002	556	1	0	1	0	0	0	copy fasta	SLC22A3	chr6	160343378	160457577
SLC22A3_chr6_160343378_160457577	0/0	a0003	556	1	1	0	0	0	0	copy fasta	SLC22A3	chr6	160343378	160457577
SLC22A4_chr5_132289394_132349190	1/1	a0001	551	198	31	26	115	6	18	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A4_chr5_132289394_132349190	0/0	a0002	551	166	65	29	62	2	8	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A4_chr5_132289394_132349190	0/0	a0003	551	25	1	19	0	4	1	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A4_chr5_132289394_132349190	0/0	a0004	551	1	1	0	0	0	0	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A4_chr5_132289394_132349190	0/0	a0005	551	1	0	0	0	0	1	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A4_chr5_132289394_132349190	0/0	a0006	551	1	0	0	0	0	1	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A4_chr5_132289394_132349190	0/0	a0007	551	1	0	0	1	0	0	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A4_chr5_132289394_132349190	0/0	a0008	551	1	0	0	0	0	1	copy fasta	SLC22A4	chr5	132289394	132349190
SLC22A5_chr5_132364710_132400612	1/1	a0001	557	398	82	77	192	10	35	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	a0002	557	6	6	0	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	a0003	557	5	5	0	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	a0004	557	1	1	0	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	a0005	557	1	0	0	1	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	a0006	557	1	0	0	1	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	a0007	557	1	0	0	0	0	1	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	a0008	557	1	0	1	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A6_chr11_62971597_62989967	1/1	a0001	550	423	80	72	209	16	44	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	a0002	550	4	4	0	0	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	a0003	550	1	0	1	0	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	a0004	550	1	0	0	1	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	a0005	550	1	0	1	0	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A7_chr6_43293260_43310538	1/1	a0001	548	399	95	73	173	12	44	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	a0002	548	2	0	0	2	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	a0003	548	1	0	1	0	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	a0004	548	1	1	0	0	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	a0005	548	1	0	0	1	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A8_chr11_62987824_63020841	1/1	a0001	542	401	87	70	183	15	44	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	a0002	542	15	0	0	15	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	a0003	542	10	6	1	3	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	a0004	542	2	0	0	0	0	2	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	a0005	542	1	0	0	1	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	a0006	542	1	0	0	0	1	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	a0007	542	1	1	0	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	a0008	542	1	0	1	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A9_chr11_63364785_63415294	1/1	a0001	553	336	91	61	120	17	45	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	a0002	553	3	0	2	0	1	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	a0003	553	2	0	0	2	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	a0004	553	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	a0005	553	1	0	0	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	a0006	553	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	a0007	553	1	0	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	a0008	553	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC23A1_chr5_139362196_139388297	1/1	a0001	598	321	73	61	137	17	31	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	a0002	598	16	9	2	1	0	4	copy fasta	SLC23A1	chr5	139362196	139388297