JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC23A1_chr5_139362196_139388297	0/0	a0003	598	3	0	1	0	1	1	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	a0004	598	3	3	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	a0005	598	2	2	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	a0006	598	2	2	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	a0007	598	1	0	0	1	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	a0008	598	1	0	0	1	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	a0009	598	1	1	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A2_chr20_4847358_5006510	1/1	a0001	650	203	84	40	47	10	20	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	a0002	650	1	0	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A3_chr2_219156465_219175029	1/1	a0001	610	422	93	69	202	12	44	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	a0002	610	6	4	2	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	a0003	610	2	0	0	0	0	2	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	a0004	610	1	0	0	1	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	a0005	610	1	1	0	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	a0006	610	1	0	0	1	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	a0007	610	1	0	1	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC24A1_chr15_65616938_65661260	1/1	a0001	1099	180	54	36	57	11	20	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0002	1099	98	12	11	65	1	9	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0003	1099	22	7	5	6	0	4	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0004	1099	5	5	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0005	1099	4	4	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0006	1099	3	3	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0007	1099	2	0	0	2	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0008	1090	2	1	0	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0009	1099	2	0	0	0	2	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0010	1099	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0011	1099	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0012	1099	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0013	1099	1	0	0	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0014	1099	1	0	0	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	a0015	1099	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A2_chr9_19502455_19794037	1/1	a0001	661	181	74	27	42	12	24	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	a0002	661	2	1	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	a0003	661	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	a0004	661	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	a0005	661	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	a0006	661	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	a0007	661	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A3_chr20_19207642_19727926	0/0	a0001	644	84	46	23	5	3	7	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	a0002	644	63	28	17	10	1	7	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	a0003	644	4	0	1	2	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	a0004	644	3	0	0	3	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	a0005	644	2	0	0	0	0	2	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	a0006	644	2	1	0	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	a0007	644	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	a0008	644	1	0	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A4_chr14_92318165_92506481	1/1	a0001	622	251	83	61	57	14	34	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	a0002	622	20	3	4	12	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	a0003	622	3	0	0	0	3	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	a0004	622	3	3	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481