JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC24A4_chr14_92318165_92506481	0/0	a0005	622	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	a0006	622	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	a0007	622	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	a0008	622	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	a0009	622	1	0	0	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A5_chr15_48115990_48147672	0/0	a0001	500	294	80	29	174	0	11	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	1/1	a0002	500	47	7	20	1	4	13	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	a0003	500	1	0	0	1	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	a0004	500	1	1	0	0	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	a0005	500	1	0	1	0	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC25A10_chr17_81707284_81726012	1/1	a0001	287	411	90	80	174	16	49	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	a0002	287	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	a0003	287	1	0	0	0	0	1	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	a0004	287	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A11_chr17_4932130_4945046	1/1	a0001	314	433	89	80	200	14	48	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	a0002	314	1	1	0	0	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A12_chr2_171778405_171899244	1/1	a0001	678	307	69	54	140	8	34	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	a0002	678	3	0	1	0	0	2	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	a0003	678	1	0	0	1	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	a0004	678	1	1	0	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	a0005	678	1	0	1	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	a0006	576	1	0	0	1	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A13_chr7_96115220_96327098	1/1	a0001	675	273	81	38	124	4	24	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	a0002	675	1	0	0	1	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	a0003	675	1	0	0	1	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	a0004	675	1	1	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A14_chrX_130334919_130378357	1/1	a0001	325	289	78	52	118	13	26	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A14_chrX_130334919_130378357	0/0	a0002	75	1	0	0	1	0	0	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A14_chrX_130334919_130378357	0/0	a0003	325	1	0	0	1	0	0	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A15_chr13_40784611_40817460	1/1	a0001	301	292	71	46	135	8	30	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	a0002	301	121	18	34	53	8	8	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	a0003	301	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	a0004	301	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	a0005	277	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A16_chr10_68472998_68532523	1/1	a0001	332	311	81	56	118	10	44	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	a0002	332	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A17_chr22_40764630_40824346	1/1	a0001	307	321	86	44	136	16	37	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	a0002	307	3	3	0	0	0	0	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	a0003	307	1	0	0	0	0	1	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	a0004	307	1	1	0	0	0	0	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A18_chr22_17558498_17595995	1/1	a0001	315	406	94	80	166	16	48	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	a0002	315	1	0	0	1	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	a0003	315	1	1	0	0	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	a0004	315	1	1	0	0	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	a0005	315	1	0	0	1	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A19_chr17_75267992_75294433	1/1	a0001	320	344	94	62	122	18	46	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A1_chr22_19170581_19183736	1/1	a0001	311	422	95	80	183	18	44	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	a0002	311	1	0	0	1	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	a0003	311	1	1	0	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A20_chr3_48851926_48903882	1/1	a0001	301	193	83	36	44	12	16	copy fasta	SLC25A20	chr3	48851926	48903882