JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC25A20_chr3_48851926_48903882	0/0	a0002	301	1	1	0	0	0	0	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A21_chr14_36672921_37177606	0/0	a0001	299	155	64	27	48	2	14	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	a0002	299	7	6	1	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	a0003	299	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	a0004	299	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A22_chr11_785475_803281	1/1	a0001	323	394	93	72	175	11	41	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0002	323	8	2	5	0	1	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0003	323	2	2	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0004	323	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0005	323	1	0	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0006	323	1	0	0	0	0	1	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0007	323	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0008	323	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	a0009	323	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A23_chr19_6435064_6464792	1/1	a0001	468	362	90	67	138	17	48	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	a0002	468	1	0	1	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	a0003	468	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	a0004	468	1	0	0	0	1	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	a0005	468	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A24_chr1_108129043_108205343	1/1	a0001	477	373	81	64	164	16	46	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	a0002	477	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A25_chr9_128063232_128114245	1/1	a0001	515	261	89	55	87	2	26	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	a0002	515	3	3	0	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	a0003	515	1	0	1	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	a0004	515	1	0	0	1	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A26_chr3_66216001_66383923	0/0	a0001	274	135	65	21	36	3	10	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	a0002	274	65	9	5	36	1	14	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	1/1	a0003	274	55	10	19	13	4	7	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	a0004	274	41	6	7	25	2	1	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	a0005	274	1	0	0	1	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	a0006	274	1	0	0	1	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A27_chr6_46647975_46683190	1/1	a0001	323	377	83	66	173	16	37	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	a0002	323	6	0	2	0	0	4	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	a0003	323	1	0	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	a0004	323	1	1	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	a0005	323	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A28_chr10_99605522_99625439	1/1	a0001	364	429	89	77	201	16	44	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	a0002	364	1	0	0	1	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	a0003	364	1	0	1	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	a0004	364	1	1	0	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A29_chr14_100286116_100311444	1/1	a0001	303	403	96	70	171	18	46	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	a0002	303	2	0	0	0	0	2	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	a0003	303	2	2	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	a0004	303	1	0	0	1	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	a0005	303	1	1	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	a0006	303	1	1	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A2_chr5_141297635_141309049	1/1	a0001	301	306	82	55	138	10	19	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	a0002	301	49	10	14	14	4	7	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	a0003	301	32	1	8	22	1	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	a0004	301	25	6	3	10	1	5	copy fasta	SLC25A2	chr5	141297635	141309049