JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC25A2_chr5_141297635_141309049	0/0	a0005	301	1	1	0	0	0	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	a0006	265	1	0	0	0	0	1	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A30_chr13_45388316_45423373	1/1	a0001	291	317	73	61	137	10	34	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A30_chr13_45388316_45423373	0/0	a0002	291	1	1	0	0	0	0	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A30_chr13_45388316_45423373	0/0	a0003	291	1	0	1	0	0	0	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A30_chr13_45388316_45423373	0/0	a0004	291	1	0	0	1	0	0	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A31_chr4_127725400_127779292	1/1	a0001	315	356	82	51	177	14	30	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A31_chr4_127725400_127779292	0/0	a0002	315	9	8	1	0	0	0	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A31_chr4_127725400_127779292	0/0	a0003	315	1	0	0	1	0	0	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A32_chr8_103393638_103420107	1/1	a0001	315	347	90	67	142	14	32	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A32_chr8_103393638_103420107	0/0	a0002	315	5	0	3	0	2	0	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A32_chr8_103393638_103420107	0/0	a0003	315	4	0	0	2	0	2	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A33_chr1_9534465_9590173	1/1	a0001	321	352	85	62	151	12	40	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	a0002	321	7	7	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	a0003	321	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	a0004	321	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	a0005	258	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A34_chr1_15731258_15746392	1/1	a0001	304	395	86	80	160	18	49	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	a0002	304	10	10	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	a0003	304	8	0	0	8	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	a0004	304	1	0	0	0	0	1	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	a0005	304	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	a0006	304	1	0	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	a0007	304	1	0	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	a0008	304	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A35_chr17_8285061_8300400	1/1	a0001	300	396	89	76	177	18	34	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	a0002	300	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	a0003	300	1	1	0	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	a0004	300	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	a0005	300	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A36_chr3_140936836_140985995	1/1	a0001	311	268	88	46	98	12	22	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	a0002	311	1	0	0	1	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	a0003	311	1	0	0	1	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A37_chr8_23523956_23580463	1/1	a0001	338	279	67	54	122	7	27	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	a0002	338	62	20	7	32	0	3	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	a0003	338	62	2	15	36	5	4	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	a0004	338	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	a0005	338	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	a0006	338	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A38_chr3_39378370_39402351	1/1	a0001	304	388	90	76	165	14	41	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	a0002	304	12	0	0	10	1	1	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	a0003	304	4	0	0	4	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	a0004	304	1	0	0	0	1	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	a0005	304	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	a0006	304	1	0	0	1	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	a0007	304	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A39_chr17_44314628_44329823	0/0	a0001	359	299	69	44	154	6	26	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	1/1	a0002	359	95	16	28	23	10	16	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	a0003	359	1	0	0	1	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	a0004	359	1	0	1	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823