JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC25A39_chr17_44314628_44329823	0/0	a0005	359	1	1	0	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	a0006	359	1	0	1	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A3_chr12_98588686_98611367	1/1	a0001	362	419	95	74	186	16	46	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	a0002	362	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A40_chr7_87828568_87881360	1/1	a0001	338	228	74	52	69	7	24	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	a0002	338	13	0	0	13	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	a0003	338	2	0	1	0	1	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	a0004	338	1	0	1	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A41_chr19_6421037_6438763	1/1	a0001	370	286	59	70	108	15	32	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0002	370	42	15	2	19	0	6	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0003	370	9	2	5	0	1	1	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0004	370	4	4	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0005	370	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0006	370	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0007	370	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0008	370	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0009	370	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0010	353	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0011	370	1	0	1	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0012	370	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	a0013	370	1	0	0	0	0	1	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A42_chr19_19058994_19118030	1/1	a0001	318	315	86	72	106	14	35	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A42_chr19_19058994_19118030	0/0	a0002	318	1	0	0	0	0	1	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A43_chrX_119394336_119459478	1/0	a0001	341	160	27	31	77	7	17	copy fasta	SLC25A43	chrX	119394336	119459478
SLC25A43_chrX_119394336_119459478	0/1	a0002	341	151	45	26	59	4	16	copy fasta	SLC25A43	chrX	119394336	119459478
SLC25A43_chrX_119394336_119459478	0/0	a0003	99	1	0	0	1	0	0	copy fasta	SLC25A43	chrX	119394336	119459478
SLC25A43_chrX_119394336_119459478	0/0	a0004	284	1	0	0	1	0	0	copy fasta	SLC25A43	chrX	119394336	119459478
SLC25A43_chrX_119394336_119459478	0/0	a0005	99	1	0	0	1	0	0	copy fasta	SLC25A43	chrX	119394336	119459478
SLC25A44_chr1_156189104_156217796	0/0	a0001	314	314	81	67	122	12	32	copy fasta	SLC25A44	chr1	156189104	156217796
SLC25A44_chr1_156189104_156217796	0/0	a0002	314	1	1	0	0	0	0	copy fasta	SLC25A44	chr1	156189104	156217796
SLC25A44_chr1_156189104_156217796	0/0	a0003	314	1	0	0	1	0	0	copy fasta	SLC25A44	chr1	156189104	156217796
SLC25A44_chr1_156189104_156217796	0/0	a0004	314	1	0	1	0	0	0	copy fasta	SLC25A44	chr1	156189104	156217796
SLC25A44_chr1_156189104_156217796	0/0	a0005	314	1	0	0	1	0	0	copy fasta	SLC25A44	chr1	156189104	156217796
SLC25A45_chr11_65370192_65387646	0/0	a0001	288	362	63	65	179	14	41	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0002	288	12	11	1	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	1/0	a0003	288	11	8	2	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0004	288	4	4	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0005	288	4	0	0	4	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0006	288	3	3	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0007	288	3	2	1	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0008	288	2	0	2	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0009	32	2	2	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0010	288	2	0	0	0	0	2	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0011	288	2	1	1	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0012	288	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/1	a0013	288	1	0	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0014	288	1	0	0	1	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0015	288	1	0	0	0	0	1	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	a0016	288	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A46_chr5_110734007_110770157	1/1	a0001	418	367	76	63	182	14	30	copy fasta	SLC25A46	chr5	110734007	110770157