JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC25A46_chr5_110734007_110770157	0/0	a0002	418	13	13	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	a0003	418	3	3	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	a0004	418	1	0	1	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	a0005	418	1	0	0	1	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	a0006	418	1	0	0	1	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A47_chr14_100318339_100335421	1/0	a0001	308	305	85	44	152	12	11	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/1	a0002	308	101	3	34	30	4	29	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0003	308	11	10	1	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0004	308	2	0	0	0	0	2	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0005	308	2	0	0	2	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0006	308	1	1	0	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0007	43	1	0	0	1	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0008	308	1	0	1	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0009	308	1	1	0	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	a0010	308	1	0	0	1	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A48_chr5_135829663_135893637	1/1	a0001	311	351	87	64	147	13	38	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	a0002	311	4	0	0	4	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	a0003	311	2	2	0	0	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	a0004	311	1	0	0	1	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	a0005	311	1	0	0	0	1	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	a0006	311	1	1	0	0	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A4_chr4_185138266_185155382	1/1	a0001	298	441	94	80	205	14	46	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	a0002	298	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	a0003	298	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	a0004	116	1	0	0	1	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A51_chr9_37882604_37909127	1/1	a0001	297	440	90	84	208	12	44	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	a0002	297	2	0	0	2	0	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A52_chr18_31754584_31765880	0/0	a0001	297	385	76	71	191	16	31	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	a0002	297	9	9	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	a0003	297	4	4	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	a0004	297	4	4	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	a0005	173	1	0	0	0	0	1	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	a0006	297	1	0	1	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	1/0	a0007	297	1	0	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	a0008	297	1	0	0	1	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	a0009	297	1	1	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A53_chrX_104094214_104162009	1/1	a0001	307	298	72	49	134	13	28	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A5_chrX_119463444_119476396	0/0	a0000	0	1	0	1	0	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/1	a0001	298	239	73	43	92	7	23	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	1/0	a0002	298	83	3	16	48	4	11	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	a0003	48	1	0	0	1	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A6_chrX_1381152_1397113	0/0	a0000	0	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	1/1	a0001	298	177	53	36	68	7	11	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	a0002	298	11	1	3	6	0	1	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	a0003	298	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	a0004	93	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	a0005	246	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	a0006	298	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	a0007	161	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	a0008	247	1	0	0	0	0	1	copy fasta	SLC25A6	chrX	1381152	1397113