JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC25A6_chrX_1381152_1397113	0/0	a0009	211	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC26A11_chr17_80215427_80258500	1/1	a0001	606	330	73	74	127	14	40	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0002	606	7	7	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0003	606	5	0	0	2	0	3	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0004	606	4	4	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0005	606	4	0	0	4	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0006	606	2	0	0	2	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0007	606	2	0	2	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0008	606	2	1	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0009	606	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0010	606	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0011	606	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0012	606	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0013	606	1	0	0	1	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0014	606	1	0	0	0	0	1	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0015	606	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0016	606	1	0	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0017	606	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	a0018	606	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A1_chr4_982657_998404	0/0	a0001	701	271	56	47	127	8	33	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	1/0	a0002	701	127	21	33	55	9	8	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0003	701	9	4	0	1	0	4	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0004	701	8	0	0	8	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0005	701	7	7	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0006	701	6	0	0	5	1	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0007	701	3	3	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0008	701	2	0	0	2	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0009	701	2	2	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0010	701	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0011	701	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0012	248	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0013	701	1	0	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0014	701	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0015	701	1	0	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0016	701	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0017	701	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0018	701	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0019	701	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0020	701	1	0	0	0	0	1	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0021	701	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/1	a0022	701	1	0	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0023	701	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	a0024	701	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A2_chr5_149955758_149992400	0/1	a0001	739	279	61	49	124	8	36	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	a0002	739	70	27	18	22	2	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	a0003	739	4	0	0	0	2	2	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	a0004	739	4	4	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	a0005	739	2	0	0	0	0	2	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	1/0	a0006	739	2	0	1	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	a0007	739	1	0	0	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400