JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC26A2_chr5_149955758_149992400	0/0	a0008	739	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	a0009	739	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A3_chr7_107760469_107808223	1/1	a0001	764	403	82	71	188	16	44	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0002	764	8	0	0	7	0	1	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0003	764	7	0	3	1	0	3	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0004	764	4	4	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0005	764	4	4	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0006	764	2	2	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0007	764	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0008	764	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0009	764	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0010	764	1	0	0	1	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0011	764	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0012	764	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0013	764	1	0	0	1	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	a0014	764	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A4_chr7_107655828_107722809	1/1	a0001	780	336	72	70	146	16	30	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0002	780	6	5	1	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0003	780	4	4	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0004	780	3	3	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0005	780	3	0	0	0	0	3	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0006	780	2	2	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0007	780	2	2	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0008	780	2	0	0	0	0	2	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0009	780	1	0	0	0	0	1	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0010	780	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0011	780	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0012	780	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0013	780	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0014	780	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0015	780	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	a0016	780	1	0	1	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A5_chr7_103369207_103451207	1/1	a0001	744	339	84	59	146	14	34	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	a0002	744	1	0	1	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	a0003	744	1	1	0	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	a0004	744	1	1	0	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A6_chr3_48620723_48640461	1/1	a0001	759	197	48	36	77	9	25	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	a0002	759	53	16	8	23	3	3	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	a0003	759	23	23	0	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	a0004	759	2	0	0	2	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	a0005	759	2	0	0	2	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	a0006	759	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	a0007	759	1	1	0	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	a0008	759	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A7_chr8_91244319_91403155	1/0	a0001	656	199	72	55	44	6	21	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/1	a0002	656	7	3	1	0	2	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	a0003	656	2	2	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	a0004	656	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	a0005	656	1	0	0	0	0	1	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A8_chr6_35938516_36029641	1/1	a0001	970	117	13	23	61	6	12	copy fasta	SLC26A8	chr6	35938516	36029641