JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC26A8_chr6_35938516_36029641	0/0	a0002	970	74	25	12	31	1	5	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0003	970	34	21	6	4	1	2	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0004	970	19	9	2	8	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0005	970	19	6	3	7	0	3	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0006	970	18	0	11	4	3	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0007	970	5	5	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0008	970	4	4	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0009	970	3	2	1	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0010	970	2	0	2	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0011	970	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0012	970	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0013	970	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0014	970	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0015	970	1	0	0	1	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0016	970	1	0	0	0	1	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0017	970	1	0	1	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0018	970	1	0	0	0	0	1	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0019	970	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0020	970	1	0	0	0	0	1	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	a0021	970	1	0	1	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A9_chr1_205908052_205948456	1/1	a0001	791	349	61	77	160	14	35	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0002	791	23	21	1	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0003	791	10	7	0	0	0	3	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0004	791	2	2	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0005	791	2	0	0	2	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0006	791	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0007	791	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0008	791	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0009	791	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0010	791	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0011	791	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0012	791	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0013	791	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0014	791	1	0	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0015	791	1	0	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0016	791	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0017	791	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0018	791	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	a0019	791	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC27A1_chr19_17465524_17511168	1/1	a0001	646	342	81	72	135	12	40	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	a0002	646	3	3	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	a0003	646	2	0	2	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	a0004	421	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	a0005	646	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	a0006	513	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A2_chr15_50177196_50241385	0/1	a0001	620	222	24	43	121	9	24	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	1/0	a0002	620	132	58	24	30	7	12	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	a0003	620	4	4	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	a0004	620	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	a0005	610	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385