JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATXN7_chr3_63858867_64008462	0/0	a0028	897	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
AUH_chr9_91208823_91366918	1/1	a0001	339	351	77	59	170	6	37	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	a0002	339	3	3	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	a0003	339	2	0	1	0	0	1	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	a0004	339	1	1	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	a0005	339	1	1	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUNIP_chr1_25829006_25864457	1/1	a0001	357	337	93	51	152	10	29	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	a0002	357	6	5	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	a0003	357	2	2	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	a0004	357	2	0	0	2	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	a0005	357	2	0	1	0	0	1	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	a0006	305	1	0	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	a0007	357	1	0	0	1	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	a0008	357	1	0	0	1	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUP1_chr2_74521652_74534706	1/1	a0001	410	381	91	68	180	10	30	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	a0002	410	5	5	0	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	a0003	410	1	1	0	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	a0004	410	1	1	0	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AURKAIP1_chr1_1368736_1380207	1/1	a0001	199	331	76	68	124	12	49	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	a0002	199	17	12	2	3	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	a0003	199	4	0	0	4	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	a0004	199	3	0	0	0	2	1	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	a0005	199	1	0	0	1	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	a0006	199	1	1	0	0	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	a0007	199	1	1	0	0	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKA_chr20_56364390_56397215	0/1	a0001	403	204	68	43	53	9	30	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	a0002	403	111	9	14	77	3	8	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	1/0	a0003	403	68	23	5	28	4	7	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	a0004	403	1	0	0	0	0	1	copy fasta	AURKA	chr20	56364390	56397215
AURKB_chr17_8199734_8215575	0/1	a0001	344	300	61	66	114	18	40	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	1/0	a0002	344	122	30	16	72	0	3	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	a0003	344	2	2	0	0	0	0	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	a0004	344	2	0	0	0	0	2	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	a0005	344	1	0	0	0	0	1	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	a0006	344	1	1	0	0	0	0	copy fasta	AURKB	chr17	8199734	8215575
AURKC_chr19_57226023_57240548	1/1	a0001	309	407	99	74	174	16	42	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	a0002	309	1	0	0	1	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	a0003	309	1	1	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	a0004	309	1	0	0	1	0	0	copy fasta	AURKC	chr19	57226023	57240548
AUTS2_chr7_69593475_70798506	0/0	a0001	1259	67	35	13	8	5	6	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	a0002	1259	6	5	0	0	0	1	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	a0003	1259	1	0	0	0	0	1	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	a0004	1259	1	0	0	0	1	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	a0005	1259	1	0	1	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AVEN_chr15_33861227_34044204	1/0	a0001	362	205	72	38	61	5	28	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0002	362	31	1	0	27	0	3	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/1	a0003	358	13	2	4	0	2	4	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0004	366	4	4	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0005	358	3	0	2	0	0	1	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0006	362	3	0	0	3	0	0	copy fasta	AVEN	chr15	33861227	34044204