JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC27A2_chr15_50177196_50241385	0/0	a0006	620	1	0	1	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	a0007	620	1	0	0	1	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A3_chr1_153770407_153785157	0/1	a0001	683	410	86	81	180	16	46	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0002	683	10	0	0	10	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0003	683	8	8	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0004	683	3	0	3	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0005	683	3	0	0	3	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0006	683	2	2	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0007	683	2	0	0	2	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0008	683	2	0	0	2	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0009	683	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0010	683	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0011	683	1	0	0	0	0	1	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0012	683	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0013	683	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0014	683	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0015	683	1	0	0	0	0	1	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0016	683	1	1	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	a0017	683	1	1	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A4_chr9_128335527_128366470	1/1	a0001	643	258	66	38	105	14	33	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0002	643	77	20	4	46	1	6	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0003	643	2	0	0	2	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0004	643	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0005	643	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0006	643	1	0	0	0	0	1	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0007	643	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0008	643	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0009	643	1	0	0	0	1	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	a0010	643	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A5_chr19_58493333_58516992	1/1	a0001	690	363	75	65	173	14	34	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0002	690	43	16	11	7	1	8	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0003	690	3	3	0	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0004	690	2	1	1	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0005	690	2	0	0	2	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0006	690	2	0	0	0	2	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0007	690	2	0	0	2	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0008	690	1	0	1	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0009	677	1	0	0	1	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0010	690	1	0	0	1	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0011	690	1	0	0	0	0	1	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0012	690	1	0	0	0	1	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0013	690	1	0	0	0	0	1	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	a0014	690	1	1	0	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A6_chr5_128960488_129038635	1/1	a0001	619	282	75	43	120	8	34	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0002	619	55	15	17	12	3	8	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0003	619	12	0	5	7	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0004	619	2	2	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0005	619	1	0	0	0	1	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0006	619	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0007	619	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635