JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC27A6_chr5_128960488_129038635	0/0	a0008	619	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0009	619	1	0	0	1	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0010	619	1	0	1	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	a0011	619	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC28A1_chr15_84879662_84950798	1/0	a0001	649	108	55	9	35	3	5	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0002	649	73	6	19	28	3	17	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0003	650	58	11	11	28	3	5	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/1	a0004	649	35	3	0	30	0	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0005	649	19	0	3	6	3	7	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0006	649	18	1	4	10	3	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0007	650	14	0	12	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0008	650	13	0	1	12	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0009	649	12	1	0	11	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0010	650	10	5	2	2	0	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0011	649	6	0	2	2	1	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0012	649	5	0	1	1	0	3	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0013	649	4	1	0	3	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0014	649	3	0	3	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0015	649	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0016	649	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0017	649	2	0	0	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0018	650	2	0	1	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0019	650	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0020	649	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0021	649	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0022	649	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0023	649	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0024	650	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0025	650	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0026	650	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	a0027	649	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A2_chr15_45247234_45282846	1/0	a0001	658	200	52	32	85	3	27	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/1	a0002	658	56	6	23	12	5	9	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	a0003	658	24	22	2	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	a0004	658	10	0	3	7	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	a0005	658	8	2	2	4	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	a0006	658	3	3	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	a0007	658	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	a0008	658	1	0	0	1	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	a0009	658	1	0	0	1	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A3_chr9_84270457_84345758	1/1	a0001	691	312	61	59	145	13	32	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0002	691	33	11	4	13	0	5	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0003	691	5	5	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0004	691	5	5	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0005	691	4	0	0	3	0	1	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0006	691	3	2	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0007	691	2	0	0	2	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0008	691	1	0	0	0	1	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	a0009	691	1	0	0	1	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC29A1_chr6_44218595_44239142	1/1	a0001	456	422	94	77	186	16	47	copy fasta	SLC29A1	chr6	44218595	44239142