JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC29A1_chr6_44218595_44239142	0/0	a0002	456	1	0	1	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	a0003	456	1	1	0	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	a0004	456	1	1	0	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	a0005	456	1	0	0	0	0	1	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A2_chr11_66357521_66376760	1/1	a0001	456	392	90	66	180	18	36	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	a0002	456	2	1	0	0	0	1	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	a0003	456	1	1	0	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	a0004	456	1	0	0	1	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	a0005	456	1	0	0	1	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	a0006	456	1	0	0	0	0	1	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A3_chr10_71314259_71368385	1/1	a0001	27	409	94	74	183	14	42	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	a0002	414	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A4_chr7_5277943_5311912	1/1	a0001	530	389	87	84	152	18	46	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	a0002	530	6	6	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	a0003	530	6	0	0	6	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	a0004	530	3	3	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	a0005	530	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	a0006	530	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	a0007	530	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	a0008	530	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC2A10_chr20_46704649_46741347	1/1	a0001	541	276	40	53	145	14	22	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0002	541	39	2	8	21	0	8	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0003	541	24	22	2	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0004	541	6	1	1	0	0	4	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0005	541	4	3	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0006	541	4	4	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0007	541	3	2	0	0	0	1	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0008	541	2	2	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0009	541	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0010	541	1	0	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0011	541	1	0	0	0	0	1	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	a0012	541	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A11_chr22_23852875_23891312	0/0	a0001	499	249	53	49	113	8	26	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/1	a0002	499	134	24	23	62	3	21	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0003	499	10	4	5	0	1	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0004	499	7	7	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0005	499	4	4	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0006	499	3	0	0	2	0	1	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0007	499	2	0	0	2	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0008	499	2	1	1	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0009	499	2	0	0	0	0	2	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0010	499	1	1	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	a0011	499	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A12_chr6_133982581_134057624	1/1	a0001	617	330	85	66	137	10	30	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	a0002	617	5	5	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	a0003	617	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	a0004	617	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	a0005	617	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A13_chr12_39750025_40111081	1/1	a0001	648	211	52	39	96	4	18	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	a0002	648	3	0	1	0	0	2	copy fasta	SLC2A13	chr12	39750025	40111081