JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC2A14_chr12_7807514_7877915	1/1	a0001	497	263	79	51	98	10	23	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	a0002	497	83	8	13	45	4	13	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	a0003	497	2	2	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	a0004	497	1	0	0	1	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	a0005	497	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A1_chr1_42920353_42963868	1/1	a0001	492	393	89	69	179	8	46	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	a0002	492	1	1	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	a0003	492	1	0	0	1	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	a0004	492	1	0	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A2_chr3_170991347_171031720	1/1	a0001	524	231	44	35	124	5	21	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	a0002	524	86	52	17	5	3	9	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	a0003	524	4	0	0	4	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	a0004	524	3	0	0	3	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	a0005	524	2	0	1	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	a0006	524	1	0	1	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	a0007	524	1	0	0	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A3_chr12_7914230_7941187	1/1	a0001	496	402	75	69	195	14	47	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	a0002	496	13	10	3	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	a0003	496	2	2	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	a0004	496	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	a0005	496	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	a0006	496	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A4RG_chr20_63734776_63749050	0/0	a0001	387	285	94	65	76	14	36	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	1/1	a0002	387	130	1	17	94	4	12	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	a0003	387	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4_chr17_7276718_7293257	1/1	a0001	509	433	91	79	205	16	40	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	a0002	509	4	3	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	a0003	509	1	0	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	a0004	509	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	a0005	509	1	0	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A5_chr1_9030106_9074635	1/1	a0001	501	329	73	59	134	18	43	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	a0002	31	2	0	0	1	0	1	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	a0003	501	2	0	0	2	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	a0004	501	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	a0005	501	1	0	1	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	a0006	501	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A6_chr9_133466094_133484099	1/1	a0001	507	409	86	76	186	16	43	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0002	507	10	8	2	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0003	507	6	0	2	1	2	1	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0004	507	6	0	0	6	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0005	507	2	0	0	2	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0006	507	2	2	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0007	507	1	0	0	1	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0008	507	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	a0009	507	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A7_chr1_8997973_9031423	1/1	a0001	512	338	70	60	149	16	41	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0002	512	56	1	16	31	2	6	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0003	512	19	3	1	14	0	1	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0004	512	7	7	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0005	512	5	4	1	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423