JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC2A7_chr1_8997973_9031423	0/0	a0006	512	4	0	0	4	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0007	512	2	2	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0008	19	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0009	512	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0010	512	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0011	512	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0012	512	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0013	512	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0014	512	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0015	512	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0016	512	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0017	512	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	a0018	512	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A8_chr9_127392169_127412898	1/1	a0001	477	403	86	73	181	16	45	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0002	477	7	1	3	0	2	1	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0003	477	2	0	0	0	0	2	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0004	477	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0005	477	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0006	477	1	1	0	0	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0007	477	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0008	477	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A8_chr9_127392169_127412898	0/0	a0009	477	1	0	0	1	0	0	copy fasta	SLC2A8	chr9	127392169	127412898
SLC2A9_chr4_9821224_10026497	1/0	a0001	540	55	26	7	13	5	3	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0002	540	50	36	6	1	2	5	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0003	540	43	0	9	29	0	5	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0004	540	43	7	4	25	1	6	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0005	540	41	2	0	38	0	1	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0006	540	37	0	7	22	0	8	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0007	540	25	4	8	9	2	2	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0008	540	14	0	4	7	2	1	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0009	540	9	3	3	0	1	2	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/1	a0010	540	5	1	0	3	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0011	540	3	0	2	0	1	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0012	540	3	2	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0013	540	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0014	540	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0015	540	1	1	0	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0016	540	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0017	540	1	0	0	1	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0018	540	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0019	540	1	0	1	0	0	0	copy fasta	SLC2A9	chr4	9821224	10026497
SLC2A9_chr4_9821224_10026497	0/0	a0020	540	1	0	0	0	0	1	copy fasta	SLC2A9	chr4	9821224	10026497
SLC30A10_chr1_219905445_219933557	1/1	a0001	485	423	93	78	190	14	46	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	a0002	485	1	1	0	0	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	a0003	240	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A10_chr1_219905445_219933557	0/0	a0004	485	1	0	0	1	0	0	copy fasta	SLC30A10	chr1	219905445	219933557
SLC30A1_chr1_211566568_211584161	1/1	a0001	507	435	87	70	216	16	44	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A1_chr1_211566568_211584161	0/0	a0002	507	1	1	0	0	0	0	copy fasta	SLC30A1	chr1	211566568	211584161
SLC30A2_chr1_26032252_26051118	0/0	a0001	372	357	98	65	148	12	34	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	a0002	372	1	0	1	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118