JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC34A1_chr5_177379434_177403848	0/0	a0002	639	9	9	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0003	639	1	1	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0004	639	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0005	639	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0006	639	1	1	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0007	639	1	0	0	0	0	1	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0008	639	1	0	1	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0009	639	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0010	639	1	0	1	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	a0011	639	1	1	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A2_chr4_25650851_25683748	0/1	a0001	690	382	85	60	185	15	36	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	1/0	a0002	690	21	1	9	0	1	9	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0003	690	9	0	3	6	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0004	690	6	6	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0005	690	5	5	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0006	690	3	0	3	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0007	690	2	0	2	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0008	690	2	1	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0009	690	1	0	0	0	0	1	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0010	690	1	0	0	1	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0011	690	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	a0012	690	1	0	1	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A3_chr9_137225901_137241555	0/1	a0001	599	318	83	65	130	12	27	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0002	599	46	1	5	31	2	7	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0003	599	19	2	0	11	1	5	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	1/0	a0004	599	9	1	4	0	0	3	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0005	599	4	4	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0006	599	3	0	3	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0007	599	3	0	1	0	1	1	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0008	599	3	0	0	0	1	2	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0009	599	2	1	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0010	375	2	0	0	2	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0011	599	2	2	0	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0012	599	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0013	599	1	0	0	0	0	1	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0014	599	1	0	0	0	1	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0015	599	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0016	599	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0017	587	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0018	599	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0019	599	1	0	1	0	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC34A3_chr9_137225901_137241555	0/0	a0020	592	1	0	0	1	0	0	copy fasta	SLC34A3	chr9	137225901	137241555
SLC35A1_chr6_87467974_87517336	1/1	a0001	337	395	87	78	174	14	40	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	a0002	337	2	2	0	0	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A1_chr6_87467974_87517336	0/0	a0003	337	1	1	0	0	0	0	copy fasta	SLC35A1	chr6	87467974	87517336
SLC35A2_chrX_48898183_48916646	1/1	a0001	396	292	76	56	124	11	23	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	a0002	92	1	0	0	1	0	0	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	a0003	392	1	0	0	1	0	0	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A2_chrX_48898183_48916646	0/0	a0004	396	1	0	0	0	0	1	copy fasta	SLC35A2	chrX	48898183	48916646
SLC35A3_chr1_99964996_100040634	1/1	a0001	325	187	74	27	62	4	18	copy fasta	SLC35A3	chr1	99964996	100040634