JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC35A3_chr1_99964996_100040634	0/0	a0002	325	5	4	1	0	0	0	copy fasta	SLC35A3	chr1	99964996	100040634
SLC35A4_chr5_140559828_140574100	1/1	a0001	324	396	89	67	185	18	35	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	a0002	324	10	9	1	0	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	a0003	324	1	0	0	0	0	1	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A4_chr5_140559828_140574100	0/0	a0004	324	1	0	0	1	0	0	copy fasta	SLC35A4	chr5	140559828	140574100
SLC35A5_chr3_112557045_112590579	1/1	a0001	424	361	86	67	157	13	36	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	a0002	424	6	5	1	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	a0003	424	2	0	0	1	1	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	a0004	424	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	a0005	424	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35A5_chr3_112557045_112590579	0/0	a0006	424	1	1	0	0	0	0	copy fasta	SLC35A5	chr3	112557045	112590579
SLC35B1_chr17_49695943_49712964	1/1	a0001	322	406	91	77	188	12	36	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	a0002	322	10	6	3	0	0	1	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	a0003	322	1	0	0	0	0	1	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B1_chr17_49695943_49712964	0/0	a0004	322	1	1	0	0	0	0	copy fasta	SLC35B1	chr17	49695943	49712964
SLC35B2_chr6_44249101_44262528	1/1	a0001	432	421	96	77	184	16	46	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	a0002	432	12	0	1	11	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B2_chr6_44249101_44262528	0/0	a0003	432	1	0	0	1	0	0	copy fasta	SLC35B2	chr6	44249101	44262528
SLC35B3_chr6_8406435_8440545	1/1	a0001	369	408	90	72	184	14	46	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B3_chr6_8406435_8440545	0/0	a0002	369	4	4	0	0	0	0	copy fasta	SLC35B3	chr6	8406435	8440545
SLC35B4_chr7_134284332_134321930	0/0	a0000	0	1	1	0	0	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	a0001	331	340	83	52	155	16	34	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35B4_chr7_134284332_134321930	0/0	a0002	331	1	0	0	1	0	0	copy fasta	SLC35B4	chr7	134284332	134321930
SLC35C1_chr11_45800149_45818016	1/1	a0001	364	385	71	66	189	14	43	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	a0002	364	38	22	9	1	4	2	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	a0003	364	3	3	0	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	a0004	364	1	0	1	0	0	0	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C1_chr11_45800149_45818016	0/0	a0005	364	1	0	0	0	0	1	copy fasta	SLC35C1	chr11	45800149	45818016
SLC35C2_chr20_46340984_46369425	1/1	a0001	365	395	90	71	168	14	50	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	a0002	365	1	0	1	0	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	a0003	365	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35C2_chr20_46340984_46369425	0/0	a0004	365	1	0	0	1	0	0	copy fasta	SLC35C2	chr20	46340984	46369425
SLC35D1_chr1_66994350_67059148	1/1	a0001	355	272	70	49	116	11	24	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	a0002	355	37	26	8	0	1	2	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D1_chr1_66994350_67059148	0/0	a0003	355	1	0	1	0	0	0	copy fasta	SLC35D1	chr1	66994350	67059148
SLC35D2_chr9_96315710_96388711	1/1	a0001	337	275	73	49	112	13	26	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	a0002	337	8	7	1	0	0	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D2_chr9_96315710_96388711	0/0	a0003	337	1	0	0	0	1	0	copy fasta	SLC35D2	chr9	96315710	96388711
SLC35D3_chr6_136917301_136930660	1/1	a0001	416	439	96	84	199	16	42	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	a0002	416	2	0	0	0	0	2	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	a0003	416	1	0	0	1	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	a0004	416	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35D3_chr6_136917301_136930660	0/0	a0005	416	1	1	0	0	0	0	copy fasta	SLC35D3	chr6	136917301	136930660
SLC35E1_chr19_16544837_16577415	1/1	a0001	410	350	90	68	140	10	40	copy fasta	SLC35E1	chr19	16544837	16577415
SLC35E2B_chr1_1656478_1697795	0/0	a0001	405	180	51	37	58	8	26	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	1/1	a0002	405	155	32	15	86	4	16	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	a0003	405	9	0	0	9	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	a0004	405	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	a0005	405	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E2B_chr1_1656478_1697795	0/0	a0006	405	1	1	0	0	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795