JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC35E2B_chr1_1656478_1697795	0/0	a0007	405	1	0	0	1	0	0	copy fasta	SLC35E2B	chr1	1656478	1697795
SLC35E3_chr12_68741176_68786468	1/1	a0001	313	431	90	72	203	17	47	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	a0002	313	2	0	0	2	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	a0003	313	2	0	0	0	1	1	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E3_chr12_68741176_68786468	0/0	a0004	313	1	0	0	1	0	0	copy fasta	SLC35E3	chr12	68741176	68786468
SLC35E4_chr22_30630781_30652893	1/1	a0001	350	420	87	77	194	16	44	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	a0002	350	2	2	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	a0003	350	1	0	1	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35E4_chr22_30630781_30652893	0/0	a0004	350	1	1	0	0	0	0	copy fasta	SLC35E4	chr22	30630781	30652893
SLC35F1_chr6_117902264_118322671	0/0	a0001	408	181	73	32	48	4	24	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F1_chr6_117902264_118322671	0/0	a0002	408	1	1	0	0	0	0	copy fasta	SLC35F1	chr6	117902264	118322671
SLC35F2_chr11_107785991_107863787	1/1	a0001	374	329	72	62	147	10	36	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	a0002	374	6	6	0	0	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	a0003	374	3	0	0	3	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	a0004	374	2	2	0	0	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F2_chr11_107785991_107863787	0/0	a0005	374	2	0	0	2	0	0	copy fasta	SLC35F2	chr11	107785991	107863787
SLC35F3_chr1_233899676_234329511	0/0	a0001	490	155	68	40	24	3	20	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	a0002	490	2	0	2	0	0	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F3_chr1_233899676_234329511	0/0	a0003	490	1	0	0	0	1	0	copy fasta	SLC35F3	chr1	233899676	234329511
SLC35F4_chr14_57558920_57871092	0/0	a0001	485	216	80	38	66	10	22	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	a0002	485	1	0	0	1	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F4_chr14_57558920_57871092	0/0	a0003	485	1	0	0	1	0	0	copy fasta	SLC35F4	chr14	57558920	57871092
SLC35F5_chr2_113701709_113761642	1/1	a0001	523	337	88	53	136	12	46	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	a0002	523	2	0	2	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	a0003	523	2	1	1	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	a0004	523	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	a0005	523	1	1	0	0	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F5_chr2_113701709_113761642	0/0	a0006	523	1	0	0	1	0	0	copy fasta	SLC35F5	chr2	113701709	113761642
SLC35F6_chr2_26759284_26786231	1/1	a0001	371	299	85	66	92	14	40	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	a0002	371	2	2	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35F6_chr2_26759284_26786231	0/0	a0003	371	1	1	0	0	0	0	copy fasta	SLC35F6	chr2	26759284	26786231
SLC35G1_chr10_93888978_93908824	1/1	a0001	365	311	92	55	111	14	37	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	a0002	365	2	0	0	1	0	1	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	a0003	365	1	0	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	a0004	365	1	0	0	1	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G1_chr10_93888978_93908824	0/0	a0005	365	1	0	1	0	0	0	copy fasta	SLC35G1	chr10	93888978	93908824
SLC35G2_chr3_136814126_136860888	0/1	a0001	412	223	47	52	84	9	30	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	1/0	a0002	412	86	27	16	30	5	7	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	a0003	412	6	5	1	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	a0004	412	1	0	1	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	a0005	412	1	1	0	0	0	0	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G2_chr3_136814126_136860888	0/0	a0006	412	1	0	0	0	0	1	copy fasta	SLC35G2	chr3	136814126	136860888
SLC35G3_chr17_35187520_35199393	1/1	a0001	338	375	67	79	170	11	46	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	a0002	338	70	24	3	39	1	3	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	a0003	338	14	4	0	10	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	a0004	338	11	0	0	11	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	a0005	338	3	3	0	0	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	a0006	338	2	0	0	2	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	a0007	338	1	0	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G3_chr17_35187520_35199393	0/0	a0008	338	1	0	0	0	0	1	copy fasta	SLC35G3	chr17	35187520	35199393