JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC35G3_chr17_35187520_35199393	0/0	a0009	338	1	0	0	1	0	0	copy fasta	SLC35G3	chr17	35187520	35199393
SLC35G4_chr18_11604596_11615612	0/1	a0001	338	157	24	37	68	8	19	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0002	338	91	3	22	55	3	8	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0003	338	71	17	5	38	4	7	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	1/0	a0004	338	49	4	6	30	1	7	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0005	338	17	8	0	9	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0006	338	13	6	0	6	0	1	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0007	338	9	6	3	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0008	338	7	6	1	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0009	338	7	7	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0010	100	5	0	0	5	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0011	338	4	4	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0012	338	3	3	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0013	338	2	0	0	2	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0014	338	2	2	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0015	338	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0016	100	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0017	338	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0018	338	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0019	338	1	0	0	1	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0020	338	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G4_chr18_11604596_11615612	0/0	a0021	338	1	1	0	0	0	0	copy fasta	SLC35G4	chr18	11604596	11615612
SLC35G5_chr8_11326012_11337360	0/0	a0001	338	130	1	23	85	6	15	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0002	338	110	58	16	24	4	8	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0003	338	66	8	11	45	0	2	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	1/1	a0004	338	50	4	22	0	8	14	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0005	338	47	16	2	22	0	7	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0006	338	6	6	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0007	338	2	0	0	2	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0008	338	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0009	338	1	0	1	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0010	338	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0011	338	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0012	338	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0013	338	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0014	338	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0015	338	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0016	338	1	1	0	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0017	338	1	0	1	0	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G5_chr8_11326012_11337360	0/0	a0018	338	1	0	0	1	0	0	copy fasta	SLC35G5	chr8	11326012	11337360
SLC35G6_chr17_7476446_7488496	0/0	a0001	338	183	23	33	105	4	18	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0002	338	85	14	20	41	5	5	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0003	338	75	29	5	24	2	15	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/1	a0004	338	27	1	17	0	5	3	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	1/0	a0005	338	18	15	1	0	0	1	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0006	338	14	13	1	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0007	338	3	3	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0008	338	3	0	3	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0009	338	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0010	338	1	1	0	0	0	0	copy fasta	SLC35G6	chr17	7476446	7488496