JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AVEN_chr15_33861227_34044204	0/0	a0007	366	3	3	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0008	362	1	0	0	1	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0009	362	1	1	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0010	362	1	0	0	0	1	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	a0011	366	1	1	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVIL_chr12_57792380_57823734	0/1	a0001	819	358	79	76	150	13	39	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0002	819	2	0	0	2	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0003	819	2	2	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0004	819	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0005	130	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0006	819	1	0	0	0	1	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0007	198	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0008	819	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0009	819	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0010	819	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	1/0	a0011	819	1	0	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0012	819	1	0	0	0	0	1	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	a0013	819	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVL9_chr7_32490489_32593726	1/1	a0001	648	269	72	50	112	7	26	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	a0002	648	50	11	7	18	3	11	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	a0003	648	9	7	2	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	a0004	648	2	0	1	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVPI1_chr10_97672424_97692241	0/0	a0001	147	230	62	38	98	8	24	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	1/1	a0002	147	180	26	38	83	9	22	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	a0003	147	24	0	6	17	1	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	a0004	147	9	9	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	a0005	147	2	0	0	2	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	a0006	147	1	1	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPR1A_chr12_63137759_63156201	1/1	a0001	418	413	80	71	196	18	46	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0002	418	17	17	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0003	418	10	0	0	10	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0004	418	3	0	0	3	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0005	418	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0006	418	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0007	418	1	0	1	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0008	418	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	a0009	418	1	0	0	1	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1B_chr1_206101936_206122388	1/0	a0001	424	320	78	51	149	14	27	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	a0002	424	45	13	2	23	0	7	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	a0003	424	20	7	6	1	2	4	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/1	a0004	424	6	0	5	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	a0005	424	2	0	2	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	a0006	424	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	a0007	424	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	a0008	424	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR2_chrX_153899673_153912166	1/1	a0001	371	281	59	49	134	8	29	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0002	371	16	1	3	7	3	2	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0003	371	7	6	1	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0004	371	7	7	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0005	371	2	2	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166