JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC35G6_chr17_7476446_7488496	0/0	a0011	338	1	0	0	1	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC35G6_chr17_7476446_7488496	0/0	a0012	338	1	0	0	1	0	0	copy fasta	SLC35G6	chr17	7476446	7488496
SLC36A1_chr5_151442603_151497379	1/1	a0001	476	389	85	68	181	14	39	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	a0002	476	6	6	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	a0003	476	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	a0004	476	2	2	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	a0005	476	2	0	0	2	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	a0006	476	1	0	0	0	0	1	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	a0007	476	1	0	0	1	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A1_chr5_151442603_151497379	0/0	a0008	476	1	1	0	0	0	0	copy fasta	SLC36A1	chr5	151442603	151497379
SLC36A2_chr5_151309972_151352559	1/1	a0001	483	326	66	62	144	14	38	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	a0002	483	24	21	2	0	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	a0003	483	3	2	1	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	a0004	483	1	1	0	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	a0005	483	1	0	1	0	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	a0006	483	1	0	0	0	0	1	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	a0007	483	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A2_chr5_151309972_151352559	0/0	a0008	483	1	0	0	1	0	0	copy fasta	SLC36A2	chr5	151309972	151352559
SLC36A3_chr5_151271358_151308766	1/0	a0001	470	163	25	28	82	9	18	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/1	a0002	470	136	36	30	47	6	16	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0003	470	46	3	6	33	1	3	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0004	470	43	24	1	13	0	5	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0005	470	6	0	0	6	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0006	470	3	3	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0007	470	3	0	0	3	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0008	470	1	0	0	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0009	470	1	1	0	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0010	470	1	0	0	0	0	1	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A3_chr5_151271358_151308766	0/0	a0011	470	1	0	1	0	0	0	copy fasta	SLC36A3	chr5	151271358	151308766
SLC36A4_chr11_93139174_93202991	1/1	a0001	504	355	84	58	160	12	39	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	a0002	504	8	1	2	0	0	5	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	a0003	504	5	0	0	5	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	a0004	504	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	a0005	504	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	a0006	504	1	1	0	0	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC36A4_chr11_93139174_93202991	0/0	a0007	504	1	0	0	1	0	0	copy fasta	SLC36A4	chr11	93139174	93202991
SLC37A1_chr21_42508852_42586426	0/1	a0001	533	261	74	51	84	13	38	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	1/0	a0002	533	79	0	5	63	3	7	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	a0003	533	5	5	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	a0004	533	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	a0005	533	4	4	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	a0006	533	1	0	0	0	0	1	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	a0007	533	1	0	0	1	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A1_chr21_42508852_42586426	0/0	a0008	533	1	1	0	0	0	0	copy fasta	SLC37A1	chr21	42508852	42586426
SLC37A2_chr11_125058305_125095516	1/0	a0001	501	274	31	47	155	9	31	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/1	a0002	501	131	43	26	35	7	19	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	a0003	501	10	9	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	a0004	501	4	3	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	a0005	501	2	2	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	a0006	501	1	0	1	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516