JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC37A2_chr11_125058305_125095516	0/0	a0007	149	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A2_chr11_125058305_125095516	0/0	a0008	501	1	1	0	0	0	0	copy fasta	SLC37A2	chr11	125058305	125095516
SLC37A3_chr7_140328752_140403530	1/1	a0001	494	211	59	40	73	12	25	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	a0002	494	127	17	22	67	4	17	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	a0003	494	4	4	0	0	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	a0004	494	2	0	0	0	0	2	copy fasta	SLC37A3	chr7	140328752	140403530
SLC37A3_chr7_140328752_140403530	0/0	a0005	494	2	0	0	2	0	0	copy fasta	SLC37A3	chr7	140328752	140403530
SLC38A10_chr17_81239811_81300307	0/0	a0000	0	1	0	0	0	0	1	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	1/0	a0001	1119	125	52	27	27	7	11	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/1	a0002	1118	53	1	13	25	1	12	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0003	1119	16	3	6	6	1	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0004	1119	7	7	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0005	1119	4	2	2	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0006	1119	2	2	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0007	1119	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0008	1119	1	0	0	1	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0009	1119	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0010	1119	1	1	0	0	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0011	1118	1	0	0	0	1	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A10_chr17_81239811_81300307	0/0	a0012	1119	1	0	0	1	0	0	copy fasta	SLC38A10	chr17	81239811	81300307
SLC38A11_chr2_164889354_164960525	1/1	a0001	462	352	77	66	163	14	30	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	a0002	462	18	0	0	17	0	1	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	a0003	462	3	0	0	3	0	0	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	a0004	462	1	0	0	0	0	1	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	a0005	462	1	0	0	1	0	0	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A11_chr2_164889354_164960525	0/0	a0006	462	1	1	0	0	0	0	copy fasta	SLC38A11	chr2	164889354	164960525
SLC38A1_chr12_46178063_46274043	1/1	a0001	487	326	69	60	155	14	26	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	a0002	487	3	3	0	0	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A1_chr12_46178063_46274043	0/0	a0003	20	1	0	0	1	0	0	copy fasta	SLC38A1	chr12	46178063	46274043
SLC38A2_chr12_46353188_46377773	1/1	a0001	506	400	90	71	185	18	34	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	a0002	506	1	0	1	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	a0003	506	1	0	0	1	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	a0004	506	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A2_chr12_46353188_46377773	0/0	a0005	506	1	1	0	0	0	0	copy fasta	SLC38A2	chr12	46353188	46377773
SLC38A3_chr3_50200271_50226486	1/1	a0001	504	342	86	68	139	13	34	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	a0002	504	2	0	0	2	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	a0003	504	1	0	0	0	1	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A3_chr3_50200271_50226486	0/0	a0004	504	1	0	0	1	0	0	copy fasta	SLC38A3	chr3	50200271	50226486
SLC38A4_chr12_46759761_46830997	1/1	a0001	547	266	66	45	120	9	24	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0002	547	54	1	4	43	1	5	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0003	547	42	24	1	16	0	1	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0004	547	11	0	10	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0005	241	2	0	0	0	0	2	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0006	547	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0007	231	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0008	547	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0009	547	1	0	0	0	0	1	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0010	547	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0011	547	1	1	0	0	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0012	547	1	0	0	0	0	1	copy fasta	SLC38A4	chr12	46759761	46830997