JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC38A4_chr12_46759761_46830997	0/0	a0013	547	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A4_chr12_46759761_46830997	0/0	a0014	547	1	0	0	1	0	0	copy fasta	SLC38A4	chr12	46759761	46830997
SLC38A5_chrX_48453544_48475260	1/1	a0001	472	281	75	47	118	7	32	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	a0002	472	30	1	11	14	2	2	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A5_chrX_48453544_48475260	0/0	a0003	99	1	0	0	1	0	0	copy fasta	SLC38A5	chrX	48453544	48475260
SLC38A6_chr14_60976245_61057630	0/1	a0001	456	219	49	43	92	8	26	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	1/0	a0002	456	82	10	8	53	0	10	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0003	456	10	0	0	10	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0004	456	3	0	0	3	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0005	456	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0006	456	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0007	456	1	1	0	0	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0008	452	1	0	1	0	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0009	456	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A6_chr14_60976245_61057630	0/0	a0010	456	1	0	0	1	0	0	copy fasta	SLC38A6	chr14	60976245	61057630
SLC38A7_chr16_58660109_58689770	1/1	a0001	462	298	36	48	168	9	35	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	a0002	462	47	45	2	0	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	a0003	462	38	13	4	4	5	12	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	a0004	462	5	0	2	3	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	a0005	462	3	0	0	3	0	0	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A7_chr16_58660109_58689770	0/0	a0006	462	1	0	0	0	0	1	copy fasta	SLC38A7	chr16	58660109	58689770
SLC38A8_chr16_84004667_84047795	1/1	a0001	435	400	63	76	195	18	46	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0002	435	8	6	2	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0003	435	6	6	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0004	435	5	3	2	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0005	435	4	2	2	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0006	435	4	4	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0007	435	3	0	0	3	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0008	435	2	2	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0009	435	2	2	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0010	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0011	435	1	0	0	0	0	1	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0012	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0013	435	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0014	435	1	0	0	0	0	1	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0015	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0016	435	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0017	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0018	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0019	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0020	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0021	435	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0022	435	1	1	0	0	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A8_chr16_84004667_84047795	0/0	a0023	435	1	0	0	1	0	0	copy fasta	SLC38A8	chr16	84004667	84047795
SLC38A9_chr5_55620848_55717324	1/0	a0001	561	189	52	26	91	4	15	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/1	a0002	561	155	36	27	70	6	15	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	a0003	561	2	2	0	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	a0004	561	1	0	0	1	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	a0005	561	1	0	1	0	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC38A9_chr5_55620848_55717324	0/0	a0006	561	1	0	0	1	0	0	copy fasta	SLC38A9	chr5	55620848	55717324