JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC38A9_chr5_55620848_55717324	0/0	a0007	561	1	0	0	1	0	0	copy fasta	SLC38A9	chr5	55620848	55717324
SLC39A10_chr2_195652226_195742700	1/1	a0001	831	362	79	63	174	12	32	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	a0002	831	11	11	0	0	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	a0003	831	2	2	0	0	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A10_chr2_195652226_195742700	0/0	a0004	831	1	0	1	0	0	0	copy fasta	SLC39A10	chr2	195652226	195742700
SLC39A11_chr17_72640949_73097688	0/1	a0001	335	129	41	23	47	6	11	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	1/0	a0002	335	27	22	4	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	a0003	335	18	6	3	6	0	3	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	a0004	335	2	2	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	a0005	335	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	a0006	335	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	a0007	335	1	0	0	1	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A11_chr17_72640949_73097688	0/0	a0008	335	1	1	0	0	0	0	copy fasta	SLC39A11	chr17	72640949	73097688
SLC39A12_chr10_17946918_18048285	0/0	a0001	691	145	19	40	70	5	11	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	1/0	a0002	691	109	19	14	56	7	12	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/1	a0003	691	72	25	10	20	1	15	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0004	691	7	7	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0005	691	7	6	0	0	1	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0006	691	6	6	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0007	691	6	6	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0008	691	4	0	1	0	2	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0009	691	4	4	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0010	691	2	2	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0011	691	1	0	0	0	0	1	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0012	691	1	1	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0013	691	1	0	1	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0014	691	1	1	0	0	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0015	691	1	0	0	1	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A12_chr10_17946918_18048285	0/0	a0016	691	1	0	0	1	0	0	copy fasta	SLC39A12	chr10	17946918	18048285
SLC39A13_chr11_47403590_47421496	0/1	a0001	371	357	74	49	181	13	39	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	a0002	371	26	4	12	2	5	3	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	1/0	a0003	371	20	18	0	1	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	a0004	371	3	0	3	0	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A13_chr11_47403590_47421496	0/0	a0005	371	2	0	0	2	0	0	copy fasta	SLC39A13	chr11	47403590	47421496
SLC39A14_chr8_22362278_22427736	0/0	a0001	490	123	67	15	29	4	8	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	1/0	a0002	492	100	13	23	42	5	16	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/1	a0003	492	97	5	19	55	5	12	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	a0004	490	1	0	1	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	a0005	490	1	1	0	0	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	a0006	492	1	0	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A14_chr8_22362278_22427736	0/0	a0007	492	1	0	0	1	0	0	copy fasta	SLC39A14	chr8	22362278	22427736
SLC39A1_chr1_153954110_153968537	1/1	a0001	324	393	86	72	175	14	44	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	a0002	324	2	0	0	2	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A1_chr1_153954110_153968537	0/0	a0003	324	1	0	0	1	0	0	copy fasta	SLC39A1	chr1	153954110	153968537
SLC39A2_chr14_20994293_21006871	0/0	a0001	309	172	66	17	63	8	18	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/1	a0002	309	166	14	39	94	4	14	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	1/0	a0003	309	101	5	24	55	4	12	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0004	309	8	7	1	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0005	309	5	4	1	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0006	220	3	0	3	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871