JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC39A2_chr14_20994293_21006871	0/0	a0007	309	2	0	0	2	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0008	309	2	0	0	2	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0009	309	2	0	0	2	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0010	309	1	0	0	1	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0011	309	1	1	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0012	309	1	0	1	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0013	309	1	1	0	0	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A2_chr14_20994293_21006871	0/0	a0014	309	1	0	0	1	0	0	copy fasta	SLC39A2	chr14	20994293	21006871
SLC39A3_chr19_2727524_2745017	1/1	a0001	314	403	88	73	190	18	32	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	a0002	314	3	3	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	a0003	314	1	0	0	1	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	a0004	314	1	1	0	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	a0005	314	1	0	1	0	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A3_chr19_2727524_2745017	0/0	a0006	314	1	0	0	1	0	0	copy fasta	SLC39A3	chr19	2727524	2745017
SLC39A4_chr8_144407414_144421844	0/0	a0001	647	114	1	23	76	1	13	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/1	a0002	647	84	1	23	53	3	3	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0003	647	69	2	16	35	7	9	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0004	647	39	1	10	17	0	11	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0005	647	37	34	3	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0006	647	16	16	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0007	647	9	9	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0008	647	9	9	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0009	647	6	6	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0010	647	4	0	0	0	4	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0011	647	4	0	1	1	0	2	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0012	647	4	0	2	0	1	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0013	647	4	2	2	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	1/0	a0014	647	3	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0015	647	2	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0016	647	2	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0017	647	2	2	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0018	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0019	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0020	647	1	0	0	0	0	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0021	647	1	0	0	0	0	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0022	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0023	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0024	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0025	647	1	0	0	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0026	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0027	647	1	0	0	1	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0028	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0029	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0030	647	1	0	0	0	0	1	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A4_chr8_144407414_144421844	0/0	a0031	647	1	1	0	0	0	0	copy fasta	SLC39A4	chr8	144407414	144421844
SLC39A5_chr12_56225051_56242846	1/1	a0001	540	374	86	68	166	16	36	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0002	540	3	3	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0003	540	3	1	0	0	2	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0004	540	3	0	0	3	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0005	540	1	0	1	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846