JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC39A5_chr12_56225051_56242846	0/0	a0006	540	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0007	540	1	1	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0008	540	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0009	540	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0010	540	1	1	0	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0011	540	1	0	1	0	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0012	540	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A5_chr12_56225051_56242846	0/0	a0013	540	1	0	0	1	0	0	copy fasta	SLC39A5	chr12	56225051	56242846
SLC39A6_chr18_36103531_36134340	0/1	a0001	755	393	78	60	202	12	40	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	1/0	a0002	755	10	8	1	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	a0003	749	4	4	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	a0004	755	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	a0005	755	1	0	1	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A6_chr18_36103531_36134340	0/0	a0006	755	1	1	0	0	0	0	copy fasta	SLC39A6	chr18	36103531	36134340
SLC39A7_chr6_33195867_33209437	0/1	a0001	469	373	87	71	156	18	40	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	a0002	469	12	1	6	1	0	4	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	a0003	469	9	8	1	0	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A7_chr6_33195867_33209437	0/0	a0004	469	1	0	0	1	0	0	copy fasta	SLC39A7	chr6	33195867	33209437
SLC39A8_chr4_102256666_102350482	1/1	a0001	460	263	91	64	65	12	29	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	a0002	460	1	0	0	1	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	a0003	460	1	0	0	0	0	1	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A8_chr4_102256666_102350482	0/0	a0004	460	1	1	0	0	0	0	copy fasta	SLC39A8	chr4	102256666	102350482
SLC39A9_chr14_69393692_69467390	1/1	a0001	307	306	89	45	114	18	38	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	a0002	307	17	0	0	17	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	a0003	307	1	0	0	1	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	a0004	307	1	1	0	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC39A9_chr14_69393692_69467390	0/0	a0005	307	1	0	1	0	0	0	copy fasta	SLC39A9	chr14	69393692	69467390
SLC3A1_chr2_44270480_44326494	1/0	a0001	685	200	78	38	65	4	14	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/1	a0002	685	143	16	34	61	10	21	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0003	685	2	0	0	2	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0004	685	2	0	0	2	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0005	685	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0006	685	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0007	685	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0008	685	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0009	685	1	0	0	1	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0010	685	1	0	0	0	0	1	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A1_chr2_44270480_44326494	0/0	a0011	685	1	1	0	0	0	0	copy fasta	SLC3A1	chr2	44270480	44326494
SLC3A2_chr11_62875896_62893860	1/1	a0001	529	422	92	74	197	16	41	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	a0002	529	2	0	1	0	0	1	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	a0003	529	2	0	1	1	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	a0004	529	2	2	0	0	0	0	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	a0005	529	1	0	0	0	0	1	copy fasta	SLC3A2	chr11	62875896	62893860
SLC3A2_chr11_62875896_62893860	0/0	a0006	529	1	0	0	0	0	1	copy fasta	SLC3A2	chr11	62875896	62893860
SLC40A1_chr2_189555590_189585786	1/1	a0001	571	334	84	62	126	16	44	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	a0002	571	7	7	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	a0003	571	2	2	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	a0004	571	2	2	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC40A1_chr2_189555590_189585786	0/0	a0005	571	1	1	0	0	0	0	copy fasta	SLC40A1	chr2	189555590	189585786
SLC41A1_chr1_205784095_205818198	1/1	a0001	513	402	94	72	180	14	40	copy fasta	SLC41A1	chr1	205784095	205818198