JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC41A2_chr12_104796801_104963290	1/1	a0001	573	373	80	55	196	6	34	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	a0002	573	9	6	3	0	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	a0003	573	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	a0004	573	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	a0005	573	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A2_chr12_104796801_104963290	0/0	a0006	573	1	0	0	1	0	0	copy fasta	SLC41A2	chr12	104796801	104963290
SLC41A3_chr3_126001357_126089124	0/1	a0001	487	307	66	60	136	10	34	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	a0002	487	46	12	2	28	2	2	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	a0003	487	7	6	1	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	a0004	487	3	0	3	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	1/0	a0005	487	3	2	0	0	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	a0006	487	2	0	0	0	0	2	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	a0007	487	1	0	0	1	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC41A3_chr3_126001357_126089124	0/0	a0008	487	1	0	0	1	0	0	copy fasta	SLC41A3	chr3	126001357	126089124
SLC43A1_chr11_57479534_57520702	1/1	a0001	559	303	77	72	109	16	27	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	a0002	559	3	0	0	3	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	a0003	559	2	2	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	a0004	559	2	2	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	a0005	559	2	2	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	a0006	559	1	0	0	0	0	1	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A1_chr11_57479534_57520702	0/0	a0007	559	1	1	0	0	0	0	copy fasta	SLC43A1	chr11	57479534	57520702
SLC43A2_chr17_1564268_1633834	1/1	a0001	569	376	93	71	143	17	50	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	a0002	569	2	2	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	a0003	569	1	0	1	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	a0004	569	1	1	0	0	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	a0005	569	1	0	0	0	1	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A2_chr17_1564268_1633834	0/0	a0006	387	1	0	0	1	0	0	copy fasta	SLC43A2	chr17	1564268	1633834
SLC43A3_chr11_57401954_57432121	1/1	a0001	491	310	76	50	124	16	42	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	a0002	491	7	6	1	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	a0003	491	5	0	0	5	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	a0004	491	4	0	2	2	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	a0005	491	2	1	1	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	a0006	491	1	1	0	0	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC43A3_chr11_57401954_57432121	0/0	a0007	491	1	0	0	1	0	0	copy fasta	SLC43A3	chr11	57401954	57432121
SLC44A1_chr9_105239651_105402346	1/1	a0001	657	91	37	17	25	6	4	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	a0002	657	50	41	7	0	0	2	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A1_chr9_105239651_105402346	0/0	a0003	657	1	0	0	1	0	0	copy fasta	SLC44A1	chr9	105239651	105402346
SLC44A2_chr19_10620553_10649557	0/1	a0001	706	298	64	60	130	14	29	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	1/0	a0002	706	99	1	13	70	4	10	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	a0003	706	2	0	0	2	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	a0004	706	1	0	0	0	0	1	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	a0005	706	1	1	0	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A2_chr19_10620553_10649557	0/0	a0006	706	1	0	1	0	0	0	copy fasta	SLC44A2	chr19	10620553	10649557
SLC44A3_chr1_94815357_94900246	0/1	a0001	653	284	47	57	137	12	30	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	1/0	a0002	653	68	41	16	0	2	8	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	a0003	653	1	0	1	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	a0004	653	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	a0005	653	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	a0006	653	1	1	0	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	a0007	653	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246