JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC44A3_chr1_94815357_94900246	0/0	a0008	653	1	1	0	0	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	a0009	653	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A3_chr1_94815357_94900246	0/0	a0010	653	1	0	0	1	0	0	copy fasta	SLC44A3	chr1	94815357	94900246
SLC44A4_chr6_31858192_31883997	0/0	a0001	710	187	62	30	68	9	18	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0002	710	101	22	23	35	6	15	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/1	a0003	710	55	1	13	32	2	6	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0004	710	52	5	12	32	1	2	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0005	710	12	0	0	12	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0006	710	6	0	3	1	0	2	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0007	710	5	1	1	3	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0008	710	2	1	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0009	710	2	0	0	2	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0010	710	2	2	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0011	710	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0012	710	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0013	710	1	0	0	0	0	1	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0014	710	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0015	710	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0016	710	1	1	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0017	710	1	0	0	1	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0018	710	1	0	1	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A4_chr6_31858192_31883997	0/0	a0019	710	1	1	0	0	0	0	copy fasta	SLC44A4	chr6	31858192	31883997
SLC44A5_chr1_75197129_75616114	1/1	a0001	717	156	70	40	16	4	24	copy fasta	SLC44A5	chr1	75197129	75616114
SLC45A1_chr1_8313114_8349165	1/1	a0001	748	327	83	51	146	11	34	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0002	748	54	13	18	5	5	13	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0003	23	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0004	748	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0005	748	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0006	748	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0007	654	1	0	1	0	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0008	748	1	0	0	0	0	1	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A1_chr1_8313114_8349165	0/0	a0009	748	1	0	0	1	0	0	copy fasta	SLC45A1	chr1	8313114	8349165
SLC45A2_chr5_33939623_33989693	1/0	a0001	530	283	90	17	143	1	31	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	a0002	530	102	7	16	68	2	9	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/1	a0003	530	51	1	36	0	9	4	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	a0004	530	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	a0005	530	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	a0006	530	1	0	1	0	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A2_chr5_33939623_33989693	0/0	a0007	530	1	0	0	1	0	0	copy fasta	SLC45A2	chr5	33939623	33989693
SLC45A3_chr1_205652851_205685509	1/1	a0001	553	367	98	61	148	14	44	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0002	541	28	0	8	20	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0003	553	1	0	1	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0004	553	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0005	553	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0006	553	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0007	553	1	0	0	0	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0008	553	1	0	0	0	0	1	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0009	553	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0010	553	1	1	0	0	0	0	copy fasta	SLC45A3	chr1	205652851	205685509
SLC45A3_chr1_205652851_205685509	0/0	a0011	553	1	0	0	1	0	0	copy fasta	SLC45A3	chr1	205652851	205685509