JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC45A4_chr8_141202174_141313288	0/1	a0001	808	73	36	7	23	2	4	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	a0002	808	66	15	12	20	7	12	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	1/0	a0003	808	39	8	12	9	2	7	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	a0004	808	5	5	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	a0005	808	1	0	1	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	a0006	808	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	a0007	808	1	0	0	0	1	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	a0008	808	1	1	0	0	0	0	copy fasta	SLC45A4	chr8	141202174	141313288
SLC45A4_chr8_141202174_141313288	0/0	a0009	808	1	0	0	0	0	1	copy fasta	SLC45A4	chr8	141202174	141313288
SLC46A1_chr17_28389642_28411212	1/1	a0001	459	387	90	77	162	16	40	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	a0002	459	5	5	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	a0003	459	1	0	1	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A1_chr17_28389642_28411212	0/0	a0004	459	1	1	0	0	0	0	copy fasta	SLC46A1	chr17	28389642	28411212
SLC46A2_chr9_112873920_112895876	1/1	a0001	475	411	81	78	192	18	40	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0002	475	19	13	0	5	0	1	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0003	475	6	0	0	6	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0004	475	5	4	1	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0005	475	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0006	469	1	1	0	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0007	475	1	0	0	1	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0008	475	1	0	0	0	0	1	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A2_chr9_112873920_112895876	0/0	a0009	475	1	0	1	0	0	0	copy fasta	SLC46A2	chr9	112873920	112895876
SLC46A3_chr13_28695080_28723970	1/1	a0001	461	406	86	67	193	14	44	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0002	461	6	0	3	0	2	1	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0003	461	3	3	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0004	461	3	3	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0005	461	2	0	2	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0006	461	1	0	0	0	0	1	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0007	461	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0008	461	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0009	461	1	1	0	0	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0010	461	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC46A3_chr13_28695080_28723970	0/0	a0011	465	1	0	0	1	0	0	copy fasta	SLC46A3	chr13	28695080	28723970
SLC47A1_chr17_19528854_19584034	1/1	a0001	570	321	76	62	132	14	35	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0002	570	7	7	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0003	570	3	3	0	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0004	570	2	0	1	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0005	570	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0006	570	1	0	1	0	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0007	570	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0008	570	1	0	0	1	0	0	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A1_chr17_19528854_19584034	0/0	a0009	570	1	0	0	0	0	1	copy fasta	SLC47A1	chr17	19528854	19584034
SLC47A2_chr17_19673317_19721584	1/1	a0001	566	356	76	76	152	16	34	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	a0002	566	5	5	0	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	a0003	566	2	0	2	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	a0004	566	1	0	0	1	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	a0005	566	1	0	0	1	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC47A2_chr17_19673317_19721584	0/0	a0006	566	1	1	0	0	0	0	copy fasta	SLC47A2	chr17	19673317	19721584
SLC48A1_chr12_47768238_47787751	1/1	a0001	146	436	98	72	198	18	48	copy fasta	SLC48A1	chr12	47768238	47787751
SLC49A3_chr4_676829_694151	1/1	a0001	559	396	89	80	170	13	42	copy fasta	SLC49A3	chr4	676829	694151