JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC49A3_chr4_676829_694151	0/0	a0002	559	3	0	1	0	1	1	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0003	559	3	0	0	3	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0004	559	3	0	0	0	2	1	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0005	559	1	1	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0006	533	1	0	0	1	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0007	559	1	1	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0008	559	1	0	1	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0009	559	1	0	0	1	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0010	559	1	1	0	0	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A3_chr4_676829_694151	0/0	a0011	559	1	0	0	1	0	0	copy fasta	SLC49A3	chr4	676829	694151
SLC49A4_chr3_122790069_122886139	1/1	a0001	478	341	79	62	140	12	46	copy fasta	SLC49A4	chr3	122790069	122886139
SLC49A4_chr3_122790069_122886139	0/0	a0002	478	1	1	0	0	0	0	copy fasta	SLC49A4	chr3	122790069	122886139
SLC4A10_chr2_161619416_161990270	1/1	a0001	1118	116	55	18	23	6	12	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	a0002	1118	1	1	0	0	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A10_chr2_161619416_161990270	0/0	a0003	1118	1	0	0	1	0	0	copy fasta	SLC4A10	chr2	161619416	161990270
SLC4A11_chr20_3222422_3244190	1/1	a0001	875	433	85	82	201	18	45	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0002	875	4	3	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0003	875	2	2	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0004	875	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0005	875	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0006	875	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0007	875	1	1	0	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0008	875	1	0	0	1	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0009	875	1	0	0	0	0	1	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A11_chr20_3222422_3244190	0/0	a0010	875	1	0	1	0	0	0	copy fasta	SLC4A11	chr20	3222422	3244190
SLC4A1AP_chr2_27658889_27699969	1/0	a0001	742	249	55	40	127	7	19	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/1	a0002	742	75	23	15	18	7	11	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	a0003	742	5	0	0	5	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	a0004	742	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	a0005	742	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	a0006	742	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	a0007	742	1	0	1	0	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1AP_chr2_27658889_27699969	0/0	a0008	742	1	0	0	1	0	0	copy fasta	SLC4A1AP	chr2	27658889	27699969
SLC4A1_chr17_44243390_44273135	1/1	a0001	911	323	67	65	145	13	31	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0002	911	37	9	7	20	0	1	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0003	911	12	12	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0004	911	9	0	3	6	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0005	911	8	0	0	5	1	2	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0006	911	6	0	0	5	1	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0007	911	2	0	0	0	0	2	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0008	911	2	0	0	2	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0009	911	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0010	911	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0011	911	1	0	1	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0012	911	1	1	0	0	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0013	911	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0014	911	1	0	0	0	1	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A1_chr17_44243390_44273135	0/0	a0015	911	1	0	0	1	0	0	copy fasta	SLC4A1	chr17	44243390	44273135
SLC4A2_chr7_151054589_151081523	1/1	a0001	1241	273	76	34	116	13	32	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	a0002	1241	116	8	30	62	4	12	copy fasta	SLC4A2	chr7	151054589	151081523