JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AVPR2_chrX_153899673_153912166	0/0	a0006	371	2	2	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0007	35	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0008	371	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0009	161	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0010	371	1	0	1	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0011	371	1	0	0	0	0	1	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0012	128	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	a0013	371	1	1	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVP_chr20_3077556_3089724	1/1	a0001	164	465	94	85	220	16	48	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	a0002	164	2	1	1	0	0	0	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	a0003	164	1	1	0	0	0	0	copy fasta	AVP	chr20	3077556	3089724
AWAT1_chrX_70229655_70245659	1/1	a0001	328	310	72	55	138	13	30	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	a0002	328	4	4	0	0	0	0	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	a0003	287	1	0	0	1	0	0	copy fasta	AWAT1	chrX	70229655	70245659
AWAT2_chrX_70035542_70054938	1/0	a0001	333	335	80	59	151	12	32	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	a0002	275	1	0	0	1	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	a0003	167	1	0	0	1	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/1	a0004	333	1	0	0	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AXDND1_chr1_179360971_179559735	1/0	a0001	1012	165	46	18	81	7	12	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0002	1011	83	7	11	52	4	9	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/1	a0003	1012	42	17	11	8	2	3	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0004	1011	13	0	5	7	1	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0005	1011	8	0	8	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0006	1012	7	0	0	7	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0007	1012	7	7	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0008	1012	5	0	5	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0009	1012	4	4	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0010	1012	3	3	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0011	1012	3	1	2	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0012	1001	3	0	3	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0013	1012	2	2	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0014	1012	1	0	0	1	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0015	1012	1	0	1	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0016	1011	1	0	0	1	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0017	1011	1	0	0	0	0	1	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0018	1012	1	0	0	1	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0019	1011	1	0	1	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0020	1011	1	1	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0021	1012	1	0	0	0	0	1	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0022	1012	1	1	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0023	1011	1	1	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	a0024	1001	1	0	1	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXIN1_chr16_282440_357723	1/1	a0001	862	359	85	73	135	16	48	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0002	862	7	7	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0003	862	3	0	3	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0004	862	2	2	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0005	862	1	0	0	0	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0006	862	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0007	862	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	a0008	862	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723