JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC4A2_chr7_151054589_151081523	0/0	a0003	1239	11	11	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	a0004	1241	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	a0005	1241	1	0	1	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	a0006	1241	1	1	0	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	a0007	1241	1	0	0	0	1	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	a0008	1241	1	0	0	1	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A2_chr7_151054589_151081523	0/0	a0009	1241	1	0	1	0	0	0	copy fasta	SLC4A2	chr7	151054589	151081523
SLC4A3_chr2_219622630_219646971	0/1	a0001	1232	212	31	44	99	9	28	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0002	1232	116	44	18	39	2	13	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	1/0	a0003	1232	11	10	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0004	1232	6	6	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0005	1232	3	3	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0006	1232	2	0	2	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0007	1238	2	0	1	0	1	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0008	1232	1	0	1	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0009	1232	1	1	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0010	1232	1	0	0	0	0	1	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0011	1232	1	0	0	0	0	1	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0012	1232	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0013	1232	1	1	0	0	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0014	1232	1	0	0	0	0	1	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A3_chr2_219622630_219646971	0/0	a0015	1232	1	0	0	1	0	0	copy fasta	SLC4A3	chr2	219622630	219646971
SLC4A4_chr4_71182259_71577083	1/1	a0001	1079	149	67	12	40	2	26	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	a0002	1079	2	0	0	2	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71182259_71577083	0/0	a0003	1079	1	1	0	0	0	0	copy fasta	SLC4A4	chr4	71182259	71577083
SLC4A4_chr4_71334020_71577083	1/1	a0001	1035	228	72	43	73	6	32	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	a0002	1035	3	0	1	2	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	a0003	1035	2	2	0	0	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A4_chr4_71334020_71577083	0/0	a0004	1035	1	0	0	1	0	0	copy fasta	SLC4A4	chr4	71334020	71577083
SLC4A5_chr2_74211242_74348416	1/1	a0001	1121	244	65	46	115	4	12	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	a0002	1121	20	17	0	1	0	2	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	a0003	1121	14	0	2	10	0	2	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	a0004	1121	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	a0005	1121	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	a0006	1121	1	0	0	1	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A5_chr2_74211242_74348416	0/0	a0007	1121	1	1	0	0	0	0	copy fasta	SLC4A5	chr2	74211242	74348416
SLC4A7_chr3_27367723_27489384	1/0	a0001	1259	232	74	43	68	12	34	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/1	a0002	1259	35	3	11	11	4	5	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0003	1259	17	0	0	16	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0004	1259	11	8	3	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0005	1259	2	1	0	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0006	1259	1	0	1	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0007	1259	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0008	1259	1	1	0	0	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0009	1259	1	0	0	1	0	0	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A7_chr3_27367723_27489384	0/0	a0010	1259	1	0	0	0	0	1	copy fasta	SLC4A7	chr3	27367723	27489384
SLC4A8_chr12_51419831_51520763	1/1	a0001	1093	353	90	59	154	14	34	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	a0002	1093	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	a0003	1093	1	0	1	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	a0004	1093	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763