JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC4A8_chr12_51419831_51520763	0/0	a0005	1093	1	1	0	0	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A8_chr12_51419831_51520763	0/0	a0006	1093	1	0	0	1	0	0	copy fasta	SLC4A8	chr12	51419831	51520763
SLC4A9_chr5_140355194_140380141	1/1	a0001	959	360	70	69	165	17	37	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0002	959	9	8	1	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0003	959	6	0	0	6	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0004	959	4	4	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0005	959	3	3	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0006	959	2	2	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0007	959	2	0	0	0	0	2	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0008	959	2	0	1	0	1	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0009	64	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0010	959	1	1	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0011	959	1	0	0	0	0	1	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0012	959	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0013	959	1	0	0	1	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0014	959	1	1	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0015	959	1	0	1	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC4A9_chr5_140355194_140380141	0/0	a0016	959	1	1	0	0	0	0	copy fasta	SLC4A9	chr5	140355194	140380141
SLC50A1_chr1_155130852_155143853	1/1	a0001	221	353	94	65	126	18	48	copy fasta	SLC50A1	chr1	155130852	155143853
SLC50A1_chr1_155130852_155143853	0/0	a0002	221	1	0	1	0	0	0	copy fasta	SLC50A1	chr1	155130852	155143853
SLC51A_chr3_196211534_196238427	0/0	a0001	340	222	26	36	128	9	23	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	1/1	a0002	340	201	74	45	46	7	27	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	a0003	340	2	0	0	0	2	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	a0004	340	1	0	0	1	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	a0005	340	1	0	0	1	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51A_chr3_196211534_196238427	0/0	a0006	340	1	0	1	0	0	0	copy fasta	SLC51A	chr3	196211534	196238427
SLC51B_chr15_65040387_65058397	1/1	a0001	128	336	89	66	125	18	36	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	a0002	128	1	1	0	0	0	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC51B_chr15_65040387_65058397	0/0	a0003	128	1	0	0	1	0	0	copy fasta	SLC51B	chr15	65040387	65058397
SLC52A1_chr17_5027602_5040426	0/1	a0001	448	198	65	56	52	7	17	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0002	448	132	10	19	81	5	17	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	1/0	a0003	448	42	1	2	34	2	2	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0004	448	40	10	3	24	2	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0005	448	3	3	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0006	448	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0007	448	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0008	448	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0009	448	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0010	448	1	0	0	0	0	1	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0011	448	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0012	448	1	0	0	1	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0013	448	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A1_chr17_5027602_5040426	0/0	a0014	448	1	1	0	0	0	0	copy fasta	SLC52A1	chr17	5027602	5040426
SLC52A2_chr8_144353613_144366272	1/1	a0001	445	367	90	68	150	16	41	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	a0002	266	13	6	2	5	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	a0003	445	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	a0004	445	1	0	0	0	0	1	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	a0005	445	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	a0006	445	1	1	0	0	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A2_chr8_144353613_144366272	0/0	a0007	445	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272