JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC52A2_chr8_144353613_144366272	0/0	a0008	445	1	0	0	1	0	0	copy fasta	SLC52A2	chr8	144353613	144366272
SLC52A3_chr20_755080_773500	1/1	a0001	469	340	68	77	150	8	35	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0002	469	57	5	2	47	0	3	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0003	469	37	11	2	15	3	6	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0004	469	14	1	3	2	5	3	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0005	469	9	9	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0006	469	4	0	0	4	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0007	469	3	3	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0008	469	1	0	0	0	0	1	copy fasta	SLC52A3	chr20	755080	773500
SLC52A3_chr20_755080_773500	0/0	a0009	469	1	1	0	0	0	0	copy fasta	SLC52A3	chr20	755080	773500
SLC5A10_chr17_18947165_19027565	1/0	a0001	596	210	51	28	103	2	25	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/1	a0002	602	82	14	31	11	9	16	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	a0003	596	57	22	3	24	1	7	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	a0004	596	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	a0005	596	1	0	0	1	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	a0006	596	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	a0007	596	1	1	0	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A10_chr17_18947165_19027565	0/0	a0008	596	1	0	1	0	0	0	copy fasta	SLC5A10	chr17	18947165	19027565
SLC5A11_chr16_24840963_24916626	1/0	a0001	675	302	68	41	153	9	30	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/1	a0002	675	53	7	16	14	5	10	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0003	675	15	13	2	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0004	675	2	2	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0005	675	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0006	675	1	0	0	1	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0007	675	1	0	0	1	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0008	675	1	0	1	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0009	675	1	1	0	0	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A11_chr16_24840963_24916626	0/0	a0010	675	1	0	0	1	0	0	copy fasta	SLC5A11	chr16	24840963	24916626
SLC5A12_chr11_26662020_26727060	1/1	a0001	618	360	72	67	174	13	32	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	a0002	618	30	22	5	0	1	2	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	a0003	618	15	0	0	13	0	2	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	a0004	618	2	2	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	a0005	618	2	0	0	2	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	a0006	618	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	a0007	618	1	1	0	0	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A12_chr11_26662020_26727060	0/0	a0008	618	1	0	0	1	0	0	copy fasta	SLC5A12	chr11	26662020	26727060
SLC5A1_chr22_32038261_32118029	1/1	a0001	664	235	76	50	70	5	32	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	a0002	664	11	1	4	0	3	3	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	a0003	664	5	5	0	0	0	0	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A1_chr22_32038261_32118029	0/0	a0004	664	1	0	0	0	0	1	copy fasta	SLC5A1	chr22	32038261	32118029
SLC5A2_chr16_31478123_31495769	1/1	a0001	672	392	83	68	179	16	44	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0002	672	6	6	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0003	672	2	2	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0004	672	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0005	672	1	0	0	1	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0006	672	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0007	672	1	0	0	1	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0008	672	1	1	0	0	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A2_chr16_31478123_31495769	0/0	a0009	672	1	0	0	1	0	0	copy fasta	SLC5A2	chr16	31478123	31495769
SLC5A3_chr21_34068578_34111260	1/1	a0001	718	343	86	73	136	12	34	copy fasta	SLC5A3	chr21	34068578	34111260